Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2791 ATGGATCCTATTACAGCACGCGGGCATTCTCTTCCCCCTCCTTTCCACGCAGCAAGAGATCTGCACCTGCACCACCAACACCAGTTCCACGCCTTACAACAAAGCACAGAAGACGAGCAAAGCGGAAGCAGCGGGGGCCTGAATCTCGCTCAGAAAAGGGACCGCgaagaaaacaacaacaacagtgaAGGCAAGGAAGGAGCTGTGTCCGGTGAAACCGAGATTACAAGAAGACCTCGCGGAAGACCCGCCGGATCCAAGAACAAGCCCAAACCCCCCATCATCATCACGCGCGACAGCGCCAACGCGCTCAAAACGCACGTCATGGAGGTCGCCGACGGCTGCGACATCGTCGACAGCGTCTCCAGCTTCGCGCGCCGCCGCCAGAGAGGGGTTTGCATCATGAGCGGCACCGGAACCGTCACCAACGTCACGCTAAGGCAACCGGCCTCCTCCGGCGCCGTCGTCACTCTCCACGGAAGGTTCGAGATCTTGTCCCTCGCCGGATCCTTCCTGCCGCCGCCTGCGCCGCCGGCAGCGTCCGGTTTGACCATATATCTGGCCGGTGGACAAGGACAGGTGGTGGGAGGAAGCGTCGTCGGTGCGCTCGTTGCTTCGGGGCCCGTGGTTATCATGTCAGCTTCGTTTAGCAACGCTGCGTATGAGAGGCTTCCGCTGGAAGATGAGGACCCTTCGATGCCGCTTCAGGGAGGTTCGATTGGGTCACCCGGCGGTGGCGGCGGCGTTGGTCAACCGCAGCCACCTCAGCAGCTTCTCGGGGATTCCACTGCGCCTCTTTTTCATGGGTTGAATCCGAGTCTTCTGAATTCTGTTCAGATGCCGTCGGAGACATTCTGGGCAACGGGTCGCTCTCCTTACTGA 882 0.5907 MDPITARGHSLPPPFHAARDLHLHHQHQFHALQQSTEDEQSGSSGGLNLAQKRDREENNNNSEGKEGAVSGETEITRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVDSVSSFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALVASGPVVIMSASFSNAAYERLPLEDEDPSMPLQGGSIGSPGGGGGVGQPQPPQQLLGDSTAPLFHGLNPSLLNSVQMPSETFWATGRSPY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2791 293 MobiDBLite consensus disorder prediction 29 95 - -
Ssu2g2791 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 7 293 - -
Ssu2g2791 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 101 230 - -
Ssu2g2791 293 MobiDBLite consensus disorder prediction 29 48 - -
Ssu2g2791 293 CDD DUF296 105 172 IPR005175 -
Ssu2g2791 293 MobiDBLite consensus disorder prediction 228 263 - -
Ssu2g2791 293 Gene3D - 104 232 - -
Ssu2g2791 293 ProSiteProfiles PPC domain profile profile. 101 238 IPR005175 -
Ssu2g2791 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 105 218 IPR005175 -
Ssu2g2791 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 293 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2791 Ssu-Chr2 88778904 88779785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2791 1 293 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 54.303 9.13e-83 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2791 - - gmx:100781436 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2791 2 88778904 88779785 Ssu2g2791 2 88778904 88779785 ECH