Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2779 ATGAAAGTTCACTCCGTTCATCTCCTTTCTCTGTTTCTACTGGTTGCACTTCTCATTCCTCAGATGGTTGTTGGAAATGCTGAGCTTAGAGCTCTGATGGCGTTGAAGTCCTCCCTGGACCCTGAGGGCAAGATCCTTAGCTCGTGGACCGGTGATGGTGACCCATGCAGTGGCTTGTACGAAGGGGTTGCGTGCAACGAGCACCGAAAAGTGGCTAACATCTCCTTGCAGGGAAAGAGTCTTTCGGGGTGGCTCTCTCCAGCGTTGGCTGAACTCAAATGCTTGTCAGGTTTATTCTTGCATTATAACAACCTTTCTGGTGAGATACCCCCACACATTTCAAATCTCACTGATCTGGTTGATCTCTATCTCGATGTGAATAATTTATCTGGTAATATTCCTCCTGAGCTCGGCAACATGGCTAGTCTCCAAGtgctGCAGTTGGGAGATAACCAGTTGGTGGGGAATATACCTACACAGATGGGGTCCTTAAAGCAGCTTAGTACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCTCCTAGCTTGGTGCACTTGAAGATGCTAAGCAGGCTAAATTTGAGCTTCAACAATCTTAGTGGTACGGTTCCGGCAACACTGGCACATATTGAACATTTGGAAGTTCTAGATATTCAGAACAATTCTTTATCAGGAATTGTTCCTTCGGcatTGAAGAGACTTGGGGAAGGATTCCAAGGTGCAAACAACCCGGGATTATGTGGAGTTGGTTTTTCTACTTTGAGAGCATGCAACAGAGATCAAGATTTAAAGGTTAACCATATTGATACATCAGATGGAGACCAACCCAAGAACGGTAATTCTTCAAAGGCTCTCCCGGAGCCTGCAAATGTCCAGTTGCATTGTGACCATACCCATTGTTCAAAATCAAGAAGGTTTCCTCAAACTGTCATCACAGCAGGTGTTATAATCATTACTCTCACGATCATATGTGCTGGATTTTTGACATTCTTCAGATACCGCCGTCAAAAGCAGAGGATTAGTAATACATCAAGTTCTTCTTCCGAAGGGAAACTTAGTCCTGACCAGCCTAAAGAGTTCTACACAAAAAGTCCATCAGCACTTGTTAATATTGAGTATTATAGTGGATGGGATCCATTGTCTAATGGGCAAAATGCTGATGATGGTGGATTATCCAATGAGTATCTAAATCAATTTAGGTTTAATGTGGATGAGGTTGAATCTGCAACACAGTACCTCTCGGAGGCCAATTTGCTTGGTAAGAGCAAATTCTCAGCAGTTTATAAAGGAGTTCTCAGAGATGGTTCTCTTGTGGCTATTAGAAGCATTAGCGCGACATGCTGCAAAACCGAGGAAGCTGAATTTGTGAAGGGGTTGAACTTGTTAACCTCTCTGAGACATGAAAACCTTGTTAGGCTGAGAGGTTTTTGTTGCTCAAGGAGTAGAGGTGAATGTTTCCTTATCTATGACTTTGCCACCATGGGTAACCTGTCTCAATATCTTGACATAGAAGATGGAAGTGGTCATGTGCTTGAGTGGGCCAAGAGAGTTTCTATCATCAAGGGCATTGCAAAGGGCATTGGATATCTGCACAGCAATGAAGCAAGCAAACCTACAATAGTTCACCAGAATATTTCAGTGGAAAATGTTCTCCTTGACCATCAGTTCAACCCATTGATCATGGATTCTGGACTACCTAAGCTTCTTGCAGATGATGTTGTTTTCTCAGCTCTAAAAGTAAGTGCTGCAATGGGATACTTAGCTCCTGAATACATCACTACTGGACGCTTTACTGAGAAGAGTGACATGTACGCATTTGGAGTTATTATTCTTCAAGTTCTATCTGGCAAGACGACAATAGGTAGTTCAATACGGGTGGCAGTTGAGTCTTTCAGATTTGAAGACTCTGTTGACACAAATCTTAGGGGAAGATATTCTAAATCTGAAGCAGCAGCGCTTTCCAAGCTTGCAATACAGTGTACTCACGAGCTTCCTGACCAAAGACCAACCATGGTGGACGTGATTCAGGAGCTGAGTGTGTTTTCTGCTCATTTATAA 2064 0.4288 MKVHSVHLLSLFLLVALLIPQMVVGNAELRALMALKSSLDPEGKILSSWTGDGDPCSGLYEGVACNEHRKVANISLQGKSLSGWLSPALAELKCLSGLFLHYNNLSGEIPPHISNLTDLVDLYLDVNNLSGNIPPELGNMASLQVLQLGDNQLVGNIPTQMGSLKQLSTLALQYNKLTGQIPPSLVHLKMLSRLNLSFNNLSGTVPATLAHIEHLEVLDIQNNSLSGIVPSALKRLGEGFQGANNPGLCGVGFSTLRACNRDQDLKVNHIDTSDGDQPKNGNSSKALPEPANVQLHCDHTHCSKSRRFPQTVITAGVIIITLTIICAGFLTFFRYRRQKQRISNTSSSSSEGKLSPDQPKEFYTKSPSALVNIEYYSGWDPLSNGQNADDGGLSNEYLNQFRFNVDEVESATQYLSEANLLGKSKFSAVYKGVLRDGSLVAIRSISATCCKTEEAEFVKGLNLLTSLRHENLVRLRGFCCSRSRGECFLIYDFATMGNLSQYLDIEDGSGHVLEWAKRVSIIKGIAKGIGYLHSNEASKPTIVHQNISVENVLLDHQFNPLIMDSGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDMYAFGVIILQVLSGKTTIGSSIRVAVESFRFEDSVDTNLRGRYSKSEAAALSKLAIQCTHELPDQRPTMVDVIQELSVFSAHL 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2779 687 Gene3D Ribonuclease Inhibitor 180 245 IPR032675 -
Ssu2g2779 687 Gene3D Ribonuclease Inhibitor 25 179 IPR032675 -
Ssu2g2779 687 Gene3D Phosphorylase Kinase; domain 1 386 493 - -
Ssu2g2779 687 Pfam Protein tyrosine and serine/threonine kinase 419 680 IPR001245 GO:0004672|GO:0006468
Ssu2g2779 687 SMART LRR_typ_2 188 211 IPR003591 -
Ssu2g2779 687 SMART LRR_typ_2 140 164 IPR003591 -
Ssu2g2779 687 SMART LRR_typ_2 92 116 IPR003591 -
Ssu2g2779 687 SMART LRR_typ_2 212 235 IPR003591 -
Ssu2g2779 687 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 683 - -
Ssu2g2779 687 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Ssu2g2779 687 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 9 683 - -
Ssu2g2779 687 Gene3D Transferase(Phosphotransferase) domain 1 495 684 - -
Ssu2g2779 687 SUPERFAMILY Protein kinase-like (PK-like) 394 682 IPR011009 -
Ssu2g2779 687 SUPERFAMILY L domain-like 28 234 - -
Ssu2g2779 687 ProSiteProfiles Protein kinase domain profile. 415 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2779 687 MobiDBLite consensus disorder prediction 344 363 - -
Ssu2g2779 687 MobiDBLite consensus disorder prediction 268 289 - -
Ssu2g2779 687 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Ssu2g2779 687 MobiDBLite consensus disorder prediction 274 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2779 Ssu-Chr2 88586989 88589892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2779 8 528 Miscellaneous Gene Families AT4G22730 56.926 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Ssu2g2779 PK_Tyr_Ser-Thr 5.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2779 - - gmx:100777169 1203.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2779 2 88586989 88589892 Ssu2g2779 2 88586989 88589892 ECH