Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2778 ATGAATAGCGGACTAGGCGTTAGTACTAGCAAAAGAGTGAATTGGACTGGTTACCCTATCATCACAACTGAAGATGAGGCTAGCCAATTCATAGTAAAACAACTCATCAATGGTGATCTTTGGTTGGCTAGCACCGGGGATAGGAGTGGCAACTTCAACTGTATAACAAAGGCTGTGACATCTGCACCCAACAACACTAACACAAGGTTCATTATCTATGTGAATAAGGGAATGTACAAAgagaatgttaaaattagtAGTGAGAAGATTAATGTGATGCTCGTGGGTGATGGTATGAATGCTACTGTAATAACTAGCAACTTGAATTACGTGGACAGACAAGACATCTCAGTGAGTGCCATTGTTGTTGTGGATGAGAATGGGTTTATAGCCTAG 396 0.3965 MNSGLGVSTSKRVNWTGYPIITTEDEASQFIVKQLINGDLWLASTGDRSGNFNCITKAVTSAPNNTNTRFIIYVNKGMYKENVKISSEKINVMLVGDGMNATVITSNLNYVDRQDISVSAIVVVDENGFIA 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2778 131 PANTHER PECTINESTERASE 1 46 - -
Ssu2g2778 131 SUPERFAMILY Pectin lyase-like 47 131 IPR011050 -
Ssu2g2778 131 Gene3D - 47 131 IPR012334 -
Ssu2g2778 131 Gene3D - 1 46 IPR012334 -
Ssu2g2778 131 PANTHER PECTINESTERASE 1 46 - -
Ssu2g2778 131 PANTHER PECTINESTERASE 47 131 - -
Ssu2g2778 131 PANTHER PECTINESTERASE 47 131 - -
Ssu2g2778 131 Pfam Pectinesterase 46 131 IPR000070 GO:0030599|GO:0042545
Ssu2g2778 131 SUPERFAMILY Pectin lyase-like 1 46 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2778 Ssu-Chr2 88573843 88575715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2778 2 46 Carbohydrate Esterase AT1G11580 55.556 5.07e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2778 K01051 - psom:113319681 102.449