Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2776 ATGGGGAGGCAACCTTGCTGTGACAAACTTGGAGTGAAGAAAGGTCCATGGACTGCTGAGGAAGACAAAAAACTCATCAATTTCATTCTCACCAATGGCCAGTGCTGTTGGCGTGCTGTTCCCAAGCTTGCTGGGCTTCGGCGTTGTGGTAAGAGTTGTCGTCTTCGTTGGACTAATTATCTAAGGCCTGACTTGAAGAGAGGGCTCCTCACACAGGCAGAAGAGCAGCTGGTTATCGATCTCCATGCCCGTCTTGGCAACagGTGGTCCAAGATTGCTGCCAGGTTACCAGGAAGGACAGACAACGAGATTAAAAATCACTGGAACACCCACATCAAGAAAAAGCTCCTTAAGATGGGTATTGATCCTGTTACTCATGAACCTCTTAACAAACAAGTCTCATCCCAGGATAGTTCGTCCCCTGCAGAGCATTTGCCACAAGCTGACAACACCCATCAGGTTGAGAAAAATGATGGGGTTCTCAACTCGGAAGAGAATTCCACCTCATCACCAGCTGAAAATTCTTCTGGGGAAGAATCCCTTTTGGTGGATAGCATTTGCAAGAATGGGTCTCTAATGAACAGCATGTGGCTGGATGAAACTCCTCTGATGGACACATTATGGGACATTACACCTAAAGTAGAGAATACAAATTATGACATGGGCTTGCCAATGTGGGAGGATAATTGTGCTTGGTTATTGGACTGCCAGGACTTTGGTATTcatgattttggttttaattgttTCAGCGAGATTGAGTCAAGTACATTGCAAACTATCGGAATGGACAGAAAAGGGCCTTAG 804 0.449 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQVSSQDSSSPAEHLPQADNTHQVEKNDGVLNSEENSTSSPAENSSGEESLLVDSICKNGSLMNSMWLDETPLMDTLWDITPKVENTNYDMGLPMWEDNCAWLLDCQDFGIHDFGFNCFSEIESSTLQTIGMDRKGP 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2776 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu2g2776 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu2g2776 267 Gene3D - 12 67 - -
Ssu2g2776 267 CDD SANT 16 61 IPR001005 -
Ssu2g2776 267 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu2g2776 267 SMART sant 13 63 IPR001005 -
Ssu2g2776 267 SMART sant 66 114 IPR001005 -
Ssu2g2776 267 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu2g2776 267 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Ssu2g2776 267 CDD SANT 71 112 IPR001005 -
Ssu2g2776 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu2g2776 267 PANTHER PROTEIN ODORANT1-LIKE 2 252 - -
Ssu2g2776 267 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu2g2776 267 MobiDBLite consensus disorder prediction 128 180 - -
Ssu2g2776 267 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 252 - -
Ssu2g2776 267 Gene3D - 70 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2776 Ssu-Chr2 88533977 88535746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2776 1 246 MYB Transcription Factor Family AT4G22680 60.150 2.30e-102 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu2g2776 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2776 K09422 - gmx:100800360 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2776 2 88533977 88535746 Ssu2g2776 2 88533977 88535746 ECH