Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2773 ATGACCATGACAGCTACACTGAGGTTTGCCTTCCTGGTTCTCATGACCCTTGTCCTCTGCATGGCTGACACTGCACAATCCGCCATTACCAGACACTCCGACCCTAACCCAGCAGAGTTCGTGAAGTCCTCATGCCGGGCCACTCGGTACCCTGTTTTATGCGCCCAATCTCTGCTGGCCTACGCCAGCGTCATTCGCCTTAGCGACCGGCAACTGGCCATGACCGCTTTGTCGGTGAGCATATCCCGCACCCGATCCTCCGCATCGTTCGTGAAGAACATGTCGAGAACAGTAGGCATGAAGCCCAGGGAGTGGAGAGCGGTACAAGACTGCGTGGAGAACATGGGTGACAGCGTGGACCGTCTGAGGCAATCGCTTAGGGAGTTGGGGCGAACGGGCGCGGCCGTGGGAGAGGACTTCGTCTGGCACATGAGCAACGTCCAGACCTGGGTTAGCGCTGCCCTCACCGACGACGACACGTGTCTTGATGGCTTCGCCGGTTCTGCCATGAACGGAAACGTGAAGGCTGCCATCAAGGACAGGGTTGTCCGTGTTGCTCAAGTCACAAGCAATGCACTCGCCTTGGTTAATCGCTTTGCCTCAAGGCACCCAACTCAAACTCCTTAA 627 0.5726 MTMTATLRFAFLVLMTLVLCMADTAQSAITRHSDPNPAEFVKSSCRATRYPVLCAQSLLAYASVIRLSDRQLAMTALSVSISRTRSSASFVKNMSRTVGMKPREWRAVQDCVENMGDSVDRLRQSLRELGRTGAAVGEDFVWHMSNVQTWVSAALTDDDTCLDGFAGSAMNGNVKAAIKDRVVRVAQVTSNALALVNRFASRHPTQTP 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2773 208 SMART PMEI_2 36 195 IPR006501 GO:0004857
Ssu2g2773 208 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 197 IPR006501 GO:0004857
Ssu2g2773 208 CDD PMEI-like_3 43 201 - -
Ssu2g2773 208 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 199 IPR035513 -
Ssu2g2773 208 PANTHER PECTINESTERASE INHIBITOR-LIKE 17 203 - -
Ssu2g2773 208 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 199 IPR035513 -
Ssu2g2773 208 Pfam Plant invertase/pectin methylesterase inhibitor 40 195 IPR006501 GO:0004857
Ssu2g2773 208 PANTHER PECTINESTERASE INHIBITOR 9 17 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2773 Ssu-Chr2 88500554 88501180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2773 35 196 Carbohydrate Esterase AT3G14310 27.607 9.15e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2773 - - gmx:100776636 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2773 2 88500554 88501180 Ssu2g2773 2 88500554 88501180 ECH