Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2772 ATGGCCGACGAAGCCAAAGCCAAAGGCAACGCAGCTTTCTCCTCCGGCGACTATGCCGCTGCCATCCGCCACTTCTCCGACGCCATCGCCTTGGCCCCCACCAACCACGTCCTCTATTCCAACCGATCCGCCGCATACGCCTCCCTTCAAAACTACGCCGAGGCCCTAGCCGATGCCAAGAAGACCGTTGAGCTCAAGTCCGACTGGTCCAAGGGCTACAGCCGTCTCGGGGCGGCTCATCTGGGCCTCGCCCAATACGACGACGCCGTTTCGGCCTATAAAAAGGGCCTCGAAATCGACCCCAACAACGAGCCCCTCAAGGCCGGACTAGCCGATGCGCAGAAGGCCATGGCAGCGGCCTCCAGGCCCCGCTCCTCGCCCACCAACCCCTTCGGCGACGCTTTCTCTGGGCCCGAGATGTGGGCCAGGCTCACCGCGGACCCTACCACTAGGGTTTACCTCCAGCAGCCCGATTTCGTTAAGATGATGCAGGATATCCAGAGAGATCCTAACAACCTCAACTTGCACCTGAAGGACCAAAGAGTCATGCAAGCCATAGGGGTTTTGCTCAACGTCAAGATTCAAAGCCCCCCCACCGGCGACACCGATATGCCCGATTCGCCTTCGCCGTTGCCGTCCGAGAGGAAGAGAGCTGCGGAGGCCGAGCCCGCGAAGCAGCCCGAGCCCGAGCCCATGGAATTGATGGAGGAGGATAGGGACGCGAAGCAGAGGAAGGCTGAGGCCCAGAAGGAAAAGGAGGCCGGCAATGCGGCGTATAAGAAGAAGGATTTTGACACCGCAATTCAACATTACACAAAGGCTTTGGAGTTGGATGATGAGGATATATCGTATCTCACAAACCGCGCTGCTGTCTACTTGGAAATGGGAAAGtaTGAGGAATGCATAGAAGATTGTGACAAGGCTGTCGAAAGAGGAAGAGAACTAAGATCAGATTTTAAGATGATAGCAAGAGCTTTGACGAGGAAAGGAACTGCATTGGTGAAAATGGCGAAGTGCTCAAAGGATTATGAGCCTGCCATTGAGACTTTCCAGAAAGCACTCACTGAGCACCGCAACCCTGACACTTTGAAGAAACTTAATGAAGCTGAAAAGGCAAAGAAAGAACTGGAACAACAAGAATATTTTGATCCAAAGTTGGCTGacgaggagagagaaaaagGAAACGAATTCTTTAAGCAGCACAAGTATCCTGAGGCTGTGAAGCATTACACAGAGTCTATACGAAGAAATCCAAAAGATCCTAGGGCTTATAGTAACAGAGCAGCATGCTACACTAAATTGGGGGCAATGCCTGAAGGTTTAAAGGATGCGGAGAAGTGCATTGAACTTGATCCAACCTTCGTAAAGGGTTATACCAGGAAAGGTGCAGTACAGTATTTCATGAAGGAATATGACAAGGCTCTGGAAACATATAGGGAGGGGTTGAAACATGATTCTAACAACCAGGAGTTGCTTGAAGGCATTAAAACATGCgtacaacaaattaataaggCTAGCCGTGGAGACTTAAGTCCTGAGGAATTGAAGGAGAGACAGgccaaggcaatgcaggaTCCAGAAATTCAGAACATCCTCCAAGACCCTGTTATGAGACAGGTATTGATTGATTTCCAGGAAAATCCCAGGGCTGCACAGGAACACACGAAGAATCCAATGGTGATGAACAAGATCCAAAAGCTGATCAGTGCTGGAATTGTTCAGATGAAGTAA 1731 0.4957 MADEAKAKGNAAFSSGDYAAAIRHFSDAIALAPTNHVLYSNRSAAYASLQNYAEALADAKKTVELKSDWSKGYSRLGAAHLGLAQYDDAVSAYKKGLEIDPNNEPLKAGLADAQKAMAAASRPRSSPTNPFGDAFSGPEMWARLTADPTTRVYLQQPDFVKMMQDIQRDPNNLNLHLKDQRVMQAIGVLLNVKIQSPPTGDTDMPDSPSPLPSERKRAAEAEPAKQPEPEPMELMEEDRDAKQRKAEAQKEKEAGNAAYKKKDFDTAIQHYTKALELDDEDISYLTNRAAVYLEMGKYEECIEDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNEFFKQHKYPEAVKHYTESIRRNPKDPRAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFVKGYTRKGAVQYFMKEYDKALETYREGLKHDSNNQELLEGIKTCVQQINKASRGDLSPEELKERQAKAMQDPEIQNILQDPVMRQVLIDFQENPRAAQEHTKNPMVMNKIQKLISAGIVQMK 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2772 576 Pfam STI1 domain 138 191 IPR041243 -
Ssu2g2772 576 Pfam STI1 domain 517 568 IPR041243 -
Ssu2g2772 576 SUPERFAMILY TPR-like 247 375 IPR011990 GO:0005515
Ssu2g2772 576 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Ssu2g2772 576 Coils Coil 359 379 - -
Ssu2g2772 576 MobiDBLite consensus disorder prediction 213 256 - -
Ssu2g2772 576 Gene3D Tetratricopeptide repeat domain 245 381 IPR011990 GO:0005515
Ssu2g2772 576 SMART CBM 137 176 IPR006636 -
Ssu2g2772 576 SMART CBM 525 564 IPR006636 -
Ssu2g2772 576 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Ssu2g2772 576 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Ssu2g2772 576 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Ssu2g2772 576 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Ssu2g2772 576 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 575 - -
Ssu2g2772 576 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515
Ssu2g2772 576 Pfam TPR repeat 394 435 - -
Ssu2g2772 576 Pfam TPR repeat 255 296 - -
Ssu2g2772 576 Gene3D - 507 576 - -
Ssu2g2772 576 Gene3D - 126 195 - -
Ssu2g2772 576 SUPERFAMILY TPR-like 386 499 IPR011990 GO:0005515
Ssu2g2772 576 PANTHER TPR REPEAT CONTAINING PROTEIN 1 575 IPR045248 GO:0006457|GO:0030544|GO:0051879
Ssu2g2772 576 SMART tpr_5 421 454 IPR019734 GO:0005515
Ssu2g2772 576 SMART tpr_5 36 69 IPR019734 GO:0005515
Ssu2g2772 576 SMART tpr_5 70 103 IPR019734 GO:0005515
Ssu2g2772 576 SMART tpr_5 2 35 IPR019734 GO:0005515
Ssu2g2772 576 SMART tpr_5 323 360 IPR019734 GO:0005515
Ssu2g2772 576 SMART tpr_5 455 488 IPR019734 GO:0005515
Ssu2g2772 576 SMART tpr_5 248 281 IPR019734 GO:0005515
Ssu2g2772 576 SMART tpr_5 282 315 IPR019734 GO:0005515
Ssu2g2772 576 SMART tpr_5 387 420 IPR019734 GO:0005515
Ssu2g2772 576 Pfam Tetratricopeptide repeat 7 60 - -
Ssu2g2772 576 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Ssu2g2772 576 ProSiteProfiles TPR repeat profile. 387 420 IPR019734 GO:0005515
Ssu2g2772 576 Coils Coil 232 252 - -
Ssu2g2772 576 MobiDBLite consensus disorder prediction 194 256 - -
Ssu2g2772 576 Gene3D Tetratricopeptide repeat domain 386 506 IPR011990 GO:0005515
Ssu2g2772 576 ProSiteProfiles TPR repeat profile. 421 454 IPR019734 GO:0005515
Ssu2g2772 576 ProSiteProfiles TPR repeat profile. 455 488 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2772 Ssu-Chr2 88490835 88494433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2772 386 482 U-box Gene Family AT3G07370 28.866 1.06e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2772 K09553 - gmx:100816776 1012.29