Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2771 ATGAATACTTTTTCACATGTTCCTCCTGGCTTTCGTTTTCATCCCActgatgaagaacttgttgatTACTACCTTAGGAAAAAGGTAGCTTCTAAAAGGATTGATCTAGATGTCATAAAAGATGTCGATCTCTATAAAATCGAGCCATGGGATCTTCAAGAATTATGCAAAATAGGAACGGATGAACAAAATGAATGGTATTTCTTTAGTCATAAAGACAAGAAGTACCCAAGTGGCACTCGTACCAATAGAGCTACAAAGGCAGGTTTCTGGAAAGCTACGGGAAGGGACAAGGCAATTTACTCTAGGCATTGCCTGATTGGCATGAGAAAGACCCTTGTGTTTTACAAAGGAAGAGCCCCAAATGGACAGAAATCTGACTGGATCATGCATGAGTACCGCCTAGAAACTAATGAAAATGGAACTCCTCAgGAAGAAGGCTGGGTTGTATGTAGAGTGTTCAAAAAGCGAATGGCAACAGTGAGGAAAATGGGGGAGTATGAGTCACCCTGTTGGTACGATGACCAAGTCTCATTCATGCAAGAGCTTGAATCCCCAAGGCCAATTTCTAACCCTTACGCATCATACCATCAGCACTACCCATGCAAGAAGGAGTTGGAATTGCAATACAATATTCCCCATGATGCTTTCCTCCAGCTTCCACAACTAGAAAGTCCCAAAGTTCCTCATTCTGCACCTAGTTTGAGTTGTAGCCAAGTTGTCCCTTATGGTTATGGAAGCAATAATAATTGCAATGCTTTGCAGGCCTCGTCACTCACTCCAGAAGAACACATACAACAACATTGCCAGCAACAAAGTCTGCAATTTCCCTATGGTCGCAATGATCAAGCAGTGGACCATGTTACGGATTGGCGAGTACTTGACAAATTTGTGGCTTCTCAGCTCAGTCACGATCAACATTTTTCCAAGGAAACCAGTTATTCCAATGTGGCTGAACAAATTAAGTTGCTAGCAAACGGATGCACAAAACCGGAAATTGGCCGGGAAATTGCTTCAACTTCCACCTCCAGTTGCCAGATTGACCTGtggaaataa 1056 0.4167 MNTFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQNEWYFFSHKDKKYPSGTRTNRATKAGFWKATGRDKAIYSRHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTPQEEGWVVCRVFKKRMATVRKMGEYESPCWYDDQVSFMQELESPRPISNPYASYHQHYPCKKELELQYNIPHDAFLQLPQLESPKVPHSAPSLSCSQVVPYGYGSNNNCNALQASSLTPEEHIQQHCQQQSLQFPYGRNDQAVDHVTDWRVLDKFVASQLSHDQHFSKETSYSNVAEQIKLLANGCTKPEIGREIASTSTSSCQIDLWK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2771 351 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Ssu2g2771 351 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Ssu2g2771 351 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Ssu2g2771 351 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 322 - -
Ssu2g2771 351 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 322 - -
Ssu2g2771 351 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2771 Ssu-Chr2 88452298 88454009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2771 1 351 NAC Transcription Factor Family AT1G12260 59.557 3.12e-143 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu2g2771 NAM 4.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2771 - - gmx:100779370 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2771 2 88452298 88454009 Ssu6g1587 6 26170701 26173397 PCT