Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2747 ATGGCTCCTTCTCTCTTCGTGTCACTGCAAGTAGCGCTTGTGGTTTTCACTTGCATATGTCATGCAGCAACAGTGACATGTACACCCCACCACGACCGTACCTTCAAAATATTCTCTTCCACCAACACCTCCACGAACCACCATTGGGTCGGACCCATCGGTCACCGTAAAATCACCGTTGACATTAACGGCGGTGGCCACTTCCGGTCCGTCCAAGACGCCGTCAATGCCGTCCCAGACAACAACAGAAAGAACGTCCTTATTCAAATCAACGCCGGATGCTACAtAGAAAAGGTGGTGGTGCCCGTGACGAAGCCGTACATAACGTTTCAGGGCGCGGGTAAGGAAGTGAGTGTGATAGAATGGCATGATCGAGCGAGTGACCCTGGTCCCAGCGGACAGCAATTGCGTACTTACAGAACCGCTTCTGTTACTGTTTTTGCCAGCTATTTTTCTGCTAGGAATATCAGCTtcaagAACACAGCACCTGCACCAATGCCTGGGATGCAGGGATGGCAAGCGGCGGCGTTTCGCATATCCGGTGACAAAGCATACTTCTCCGGATGCGGCTTCTACGGTGCTCAAGACACACTTTGCGACGACGCAGGCAGACATTATTTCAAAGAATGCTACATTGAGGGATCCATTGATTTCATTTTTGGGAATGGCAGGTCCATGTACAAGGGTTGCGAGCTACATTCCATAGCAACGAGGTTCGGTTCCATAGCAGCCCACGATAGGAAACACCCAGAAGAGAAGACAGGGTTCGCATTCGTACGATGCAGGGTGACAGGTACGGGTCCACTATATGTGGGGCGAGCAATGGGACAGTACTCCAGAATTGTCTACTCTTACACATATTTTGATGATATAGTTGCACATGGCGGTTGGGATGATTGGGACCATGCGGACAATAAGAACAAGACCGTGTTCTTCGGAGTGTACAAGTGTTGGGGACCAGGAGCAGAGGCTGTACGTGGGGTCTCATGGGCCCGAGACTTAGATTTTGAATTGGCCCATCCATTTCTCGTCAAGAGCTTCGTCAATGGGAGACACTGGATCGCGCCATCTGATGCTTAG 1080 0.5056 MAPSLFVSLQVALVVFTCICHAATVTCTPHHDRTFKIFSSTNTSTNHHWVGPIGHRKITVDINGGGHFRSVQDAVNAVPDNNRKNVLIQINAGCYIEKVVVPVTKPYITFQGAGKEVSVIEWHDRASDPGPSGQQLRTYRTASVTVFASYFSARNISFKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKGCELHSIATRFGSIAAHDRKHPEEKTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYSYTYFDDIVAHGGWDDWDHADNKNKTVFFGVYKCWGPGAEAVRGVSWARDLDFELAHPFLVKSFVNGRHWIAPSDA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2747 359 ProSitePatterns Pectinesterase signature 2. 212 221 IPR033131 -
Ssu2g2747 359 Gene3D - 54 358 IPR012334 -
Ssu2g2747 359 PANTHER PECTINESTERASE 68-RELATED 26 358 - -
Ssu2g2747 359 SUPERFAMILY Pectin lyase-like 56 356 IPR011050 -
Ssu2g2747 359 Pfam Pectinesterase 58 350 IPR000070 GO:0030599|GO:0042545
Ssu2g2747 359 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 26 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2747 Ssu-Chr2 88003682 88008374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2747 5 359 Carbohydrate Esterase AT5G47500 72.145 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2747 - - gmx:100816190 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2747 2 88003682 88008374 Ssu2g2747 2 88003682 88008374 ECH
Ssu2g2747 2 88003682 88008374 Ssu6g1619 6 26949949 26954077 PCT