Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu2g2744 | ATGGAGAGGCACAAATGCAAGCTCTGCTCCAGAACATTCGCCAATGGCAGAGCACTCGGTGGCCACATGAAGGCTCACTTAGCCACCCTCCCCCTTCCCCCCAAACCCCAACCTCTCCCTGAAGACTCTGCTTCCTTCTCATTTAATTCCTCTTCGGAGCATCACGAAGAAGCCGCAACCGATGAAAAGGCCCTGATTTATGGCTTGCGAGAGAATCCCAAGAAATGTTTCAGGCTCGCAGATCCCGAGTTCGACACGGGCTCTGTCGTGCAAGACAGGGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCGACGATCCAAGCGGACCCGACGGCCCGCCAATTCGGAAGAGCCCAAAAGGCCCAAACTGAGTTTCATGGAGTCCCCGGAGCCCGCCAGCTCCGTCTCCGACACTTCCCCGGAGGAAGACGTCGCCATGTGCCTCATGATGCTGTCGAGGGACCGATGGAGCAGGAGCGTCGTTAATAATGATGTTGTTGTCCAAGAAGAAGAGGGCGTGAGATCACTAGAGATCAAGTCCGGGAGAGTTCGCGGGAAGCACCAGTGTCATAGTTGCGGGAAGACGTTTCGATCCTCACGCGCATTGGGCAGTCACAGAAGCATTTGTGAAGGGTCGGGTAACGATAGTAAAATCTTCGAATGCCCCTTTTGTGCTAAGGTGTTTGGGTCCGGTCAAGCCCTCGGTGGCCACAAGAGATCTCACCTCATGCCTTCTTCGTCCTCAAACGTAAACGATTCTACCAAATTGAAAGAGAGCTTCATAGATCTCAACTTGCCGGCTCCGCCAGAAGACGACGACCTTAGTGTTCTTTCTGATGCTTAA | 846 | 0.539 | MERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPQPLPEDSASFSFNSSSEHHEEAATDEKALIYGLRENPKKCFRLADPEFDTGSVVQDRESETESKNPTRRRSKRTRRPANSEEPKRPKLSFMESPEPASSVSDTSPEEDVAMCLMMLSRDRWSRSVVNNDVVVQEEEGVRSLEIKSGRVRGKHQCHSCGKTFRSSRALGSHRSICEGSGNDSKIFECPFCAKVFGSGQALGGHKRSHLMPSSSSNVNDSTKLKESFIDLNLPAPPEDDDLSVLSDA | 281 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu2g2744 | 281 | SMART | c2h2final6 | 220 | 242 | IPR013087 | - | |
Ssu2g2744 | 281 | SMART | c2h2final6 | 188 | 208 | IPR013087 | - | |
Ssu2g2744 | 281 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
Ssu2g2744 | 281 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 29 | IPR036236 | - | |
Ssu2g2744 | 281 | MobiDBLite | consensus disorder prediction | 87 | 142 | - | - | |
Ssu2g2744 | 281 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 220 | 247 | IPR013087 | - | |
Ssu2g2744 | 281 | Gene3D | Classic Zinc Finger | 185 | 242 | - | - | |
Ssu2g2744 | 281 | Pfam | C2H2-type zinc finger | 3 | 28 | - | - | |
Ssu2g2744 | 281 | Pfam | C2H2-type zinc finger | 188 | 207 | - | - | |
Ssu2g2744 | 281 | Pfam | C2H2-type zinc finger | 220 | 243 | - | - | |
Ssu2g2744 | 281 | MobiDBLite | consensus disorder prediction | 87 | 103 | - | - | |
Ssu2g2744 | 281 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 281 | IPR044303 | GO:0006355 | |
Ssu2g2744 | 281 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 281 | - | - | |
Ssu2g2744 | 281 | MobiDBLite | consensus disorder prediction | 30 | 60 | - | - | |
Ssu2g2744 | 281 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 222 | 242 | IPR013087 | - | |
Ssu2g2744 | 281 | MobiDBLite | consensus disorder prediction | 111 | 125 | - | - | |
Ssu2g2744 | 281 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 188 | 217 | IPR013087 | - | |
Ssu2g2744 | 281 | SUPERFAMILY | beta-beta-alpha zinc fingers | 188 | 242 | IPR036236 | - | |
Ssu2g2744 | 281 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
Ssu2g2744 | 281 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 31 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu2g2744 | Ssu-Chr2 | 87924738 | 87925583 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu2g2744 | 1 | 278 | C2H2 Transcription Factor Family | AT3G60580 | 35.873 | 1.17e-46 | 156 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Ssu2g2744 | zf-C2H2_6 | 1.6e-07 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu2g2744 | - | - | gmx:100815124 | 418.698 |