Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2744 ATGGAGAGGCACAAATGCAAGCTCTGCTCCAGAACATTCGCCAATGGCAGAGCACTCGGTGGCCACATGAAGGCTCACTTAGCCACCCTCCCCCTTCCCCCCAAACCCCAACCTCTCCCTGAAGACTCTGCTTCCTTCTCATTTAATTCCTCTTCGGAGCATCACGAAGAAGCCGCAACCGATGAAAAGGCCCTGATTTATGGCTTGCGAGAGAATCCCAAGAAATGTTTCAGGCTCGCAGATCCCGAGTTCGACACGGGCTCTGTCGTGCAAGACAGGGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCGACGATCCAAGCGGACCCGACGGCCCGCCAATTCGGAAGAGCCCAAAAGGCCCAAACTGAGTTTCATGGAGTCCCCGGAGCCCGCCAGCTCCGTCTCCGACACTTCCCCGGAGGAAGACGTCGCCATGTGCCTCATGATGCTGTCGAGGGACCGATGGAGCAGGAGCGTCGTTAATAATGATGTTGTTGTCCAAGAAGAAGAGGGCGTGAGATCACTAGAGATCAAGTCCGGGAGAGTTCGCGGGAAGCACCAGTGTCATAGTTGCGGGAAGACGTTTCGATCCTCACGCGCATTGGGCAGTCACAGAAGCATTTGTGAAGGGTCGGGTAACGATAGTAAAATCTTCGAATGCCCCTTTTGTGCTAAGGTGTTTGGGTCCGGTCAAGCCCTCGGTGGCCACAAGAGATCTCACCTCATGCCTTCTTCGTCCTCAAACGTAAACGATTCTACCAAATTGAAAGAGAGCTTCATAGATCTCAACTTGCCGGCTCCGCCAGAAGACGACGACCTTAGTGTTCTTTCTGATGCTTAA 846 0.539 MERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPQPLPEDSASFSFNSSSEHHEEAATDEKALIYGLRENPKKCFRLADPEFDTGSVVQDRESETESKNPTRRRSKRTRRPANSEEPKRPKLSFMESPEPASSVSDTSPEEDVAMCLMMLSRDRWSRSVVNNDVVVQEEEGVRSLEIKSGRVRGKHQCHSCGKTFRSSRALGSHRSICEGSGNDSKIFECPFCAKVFGSGQALGGHKRSHLMPSSSSNVNDSTKLKESFIDLNLPAPPEDDDLSVLSDA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2744 281 SMART c2h2final6 220 242 IPR013087 -
Ssu2g2744 281 SMART c2h2final6 188 208 IPR013087 -
Ssu2g2744 281 SMART c2h2final6 4 26 IPR013087 -
Ssu2g2744 281 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Ssu2g2744 281 MobiDBLite consensus disorder prediction 87 142 - -
Ssu2g2744 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 247 IPR013087 -
Ssu2g2744 281 Gene3D Classic Zinc Finger 185 242 - -
Ssu2g2744 281 Pfam C2H2-type zinc finger 3 28 - -
Ssu2g2744 281 Pfam C2H2-type zinc finger 188 207 - -
Ssu2g2744 281 Pfam C2H2-type zinc finger 220 243 - -
Ssu2g2744 281 MobiDBLite consensus disorder prediction 87 103 - -
Ssu2g2744 281 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 281 IPR044303 GO:0006355
Ssu2g2744 281 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 281 - -
Ssu2g2744 281 MobiDBLite consensus disorder prediction 30 60 - -
Ssu2g2744 281 ProSitePatterns Zinc finger C2H2 type domain signature. 222 242 IPR013087 -
Ssu2g2744 281 MobiDBLite consensus disorder prediction 111 125 - -
Ssu2g2744 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 217 IPR013087 -
Ssu2g2744 281 SUPERFAMILY beta-beta-alpha zinc fingers 188 242 IPR036236 -
Ssu2g2744 281 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Ssu2g2744 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2744 Ssu-Chr2 87924738 87925583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2744 1 278 C2H2 Transcription Factor Family AT3G60580 35.873 1.17e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu2g2744 zf-C2H2_6 1.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2744 - - gmx:100815124 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2744 2 87924738 87925583 Ssu6g1624 6 27015799 27016680 PCT