Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2734 ATGGTGAAGATAGCTCTTGGTACCTTTGATGACTCTTTTGCCGTTGCCTCTCTCAAGGCTTATTTAGCAGAGTTCCATGCCACTCTGCTTTTCGTGTTCGCTGGTGTTGGATCGGCCATCGCTTACAATGAGCTTACGAAGGATGCAGCCTTGGATCCAACGGGCCTGGTGGCAGTAGCTGTGGCCCACGCATTTGCACTATTTGTGGGCGTGTCCGTCGCAGCCAACATCTCAGGTGGCCATTTGAACCCAGCTGTCACATTTGGATTGGCTATTGGAGGCAACATCACCCTCCTAACCGGTTTCTTGTACTGGATTGCCCAATTGCTGGGCTCAATTGTTGCATGTCTCCTCCTCAATTTAGTCACCGCtaagAGCATTCCAACCCACGGAGTGACTGGTGTGAACGCTTTCCAAGGTGTAGTATTTGAGATTGTTATTACATTTGCGTTGATTTACACTGTGTATGCAACTGCTGCTGACCCCAAAAAGGGCTCATTGGGTATCATTGCACCCATTGCTATTGGGTTCATTGTGGGTGCCAACATCTTGGCTGCTGGTCCATTCAGCGGCGGTTCAATGAACCCAGCTCGCTCATTCGGCCCAGCTGTGGTTAGTGGAAACTTCGCTGATAACTGGATCTACTGGGTTGGCCCATTGATTGGAGGAGGCTTGGCTGGGTTGATTTATGGGGACATCTTCATTGGTTCCTATGCCCCTGCCCCGGCCTCTGAATCCTacccttaa 747 0.4993 MVKIALGTFDDSFAVASLKAYLAEFHATLLFVFAGVGSAIAYNELTKDAALDPTGLVAVAVAHAFALFVGVSVAANISGGHLNPAVTFGLAIGGNITLLTGFLYWIAQLLGSIVACLLLNLVTAKSIPTHGVTGVNAFQGVVFEIVITFALIYTVYATAADPKKGSLGIIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFADNWIYWVGPLIGGGLAGLIYGDIFIGSYAPAPASESYP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2734 248 Gene3D Glycerol uptake facilitator protein. 2 239 IPR023271 -
Ssu2g2734 248 CDD MIP 19 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2734 248 Pfam Major intrinsic protein 15 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2734 248 PANTHER AQUAPORIN-8 1 248 IPR034294 -
Ssu2g2734 248 PANTHER AQUAPORIN TIP2-2-RELATED 1 248 - -
Ssu2g2734 248 SUPERFAMILY Aquaporin-like 16 235 IPR023271 -
Ssu2g2734 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Ssu2g2734 248 PRINTS Major intrinsic protein family signature 176 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2734 248 PRINTS Major intrinsic protein family signature 213 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2734 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2734 248 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2734 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2734 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2734 248 TIGRFAM MIP: MIP family channel proteins 23 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2734 Ssu-Chr2 87793492 87795508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2734 1 245 Major Intrinsic Protein MIP AT5G47450 78.947 9.46e-135 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2734 K09873 - gmx:100527333 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2734 2 87793492 87795508 Ssu2g2734 2 87793492 87795508 ECH