Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2727 ATGGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTAATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTACAGGCAGCAACCTTCCATTGTTCGTGTGACAAGGCCGACCCGTCCTGACAAAGCTCGTCGCTTGGGTTATAAGGCCAAGCAGGGTTATGTGGTTTACCGTGTTCGTGTTCGGAGGGGTGGCCGAAAAAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCAACAAACCAGGGTGTTACTCAACTAAAATTTCAGAGGAGCAAGAGGTCAGTTGCTGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATgagGACTCGACTTACAAATACTTTGAGATAATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCTGCAATCCAGTGCATAAGCACAGGGAGCTGCGTGGGCTCACCTCTGCTGGGAAAAGCAACAGGGGCTTACGGGGCAGAGGACATCTGTACCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCCCTTCGCCGTTACCGCTAA 615 0.5106 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHAAIRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2727 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Ssu2g2727 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Ssu2g2727 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Ssu2g2727 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Ssu2g2727 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Ssu2g2727 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 - -
Ssu2g2727 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2727 Ssu-Chr2 87728875 87730811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2727 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 91.176 1.17e-126 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2727 K02877 - gmx:100798324 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2727 2 87728875 87730811 Ssu2g2727 2 87728875 87730811 ECH
Ssu2g2727 2 87728875 87730811 Ssu6g1636 6 27138807 27141069 PCT