Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2726 ATGATGAGCCCATTGACCTTTCAAGCCTTGCAGCTACAATCAATGACTGTTCCCGCCAAGCCATTTACACGATACTGTCTATCCCTCTCATTTATGGCACCCCCCAAGAATGATGAAACTGCTAAGAAAACGAACAACAGAGGAGCATGGACCGCGGAGGAAGATCAAAAGCTAGCCCAGTGCATTGAAATTCACGGTGCAAAGAGGTGGAAAACTGTTGCAATTAAATCAGGTCTAAACAGATGTGGAAAAAGTTGCAGGCTGAGATGGTTAAACTATCTGAGACCCAATATCAAGAGGGGAAACATATCAGTTGAAGAAGAGGATTTGATTATTAGGCTTCACAAACTGCTGGGAAACAGGTGGTCTTTGATAGCTAAGAGGCTTCCAGGACGAACAGACAATGAAATTAAGAACTACTGGAATACTTGTTTGTGCAAAAAAGTTAATCACACAAAGGAGAAACCGGAAACTTCAACGGCACAACCAACACATATGACTCAGAATACCGGGGAAACAGCAGCGGTAGAGAATAAAGAGGCCATTGATGATGGGAGTGGGGACTCAGAAGTTAACTTTGATGTGAACGAATTCTTCAACTTCTCCATGGAAGGACTCTATGCGTTGGATTGGATGATCTAG 642 0.4315 MMSPLTFQALQLQSMTVPAKPFTRYCLSLSFMAPPKNDETAKKTNNRGAWTAEEDQKLAQCIEIHGAKRWKTVAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLIIRLHKLLGNRWSLIAKRLPGRTDNEIKNYWNTCLCKKVNHTKEKPETSTAQPTHMTQNTGETAAVENKEAIDDGSGDSEVNFDVNEFFNFSMEGLYALDWMI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2726 213 ProSiteProfiles Myb-like domain profile. 42 94 IPR001005 -
Ssu2g2726 213 SMART sant 46 96 IPR001005 -
Ssu2g2726 213 SMART sant 99 147 IPR001005 -
Ssu2g2726 213 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Ssu2g2726 213 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 35 212 - -
Ssu2g2726 213 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 35 212 - -
Ssu2g2726 213 MobiDBLite consensus disorder prediction 156 175 - -
Ssu2g2726 213 SUPERFAMILY Homeodomain-like 46 141 IPR009057 -
Ssu2g2726 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Ssu2g2726 213 MobiDBLite consensus disorder prediction 154 175 - -
Ssu2g2726 213 Pfam Myb-like DNA-binding domain 100 144 IPR001005 -
Ssu2g2726 213 Pfam Myb-like DNA-binding domain 47 94 IPR001005 -
Ssu2g2726 213 CDD SANT 104 143 IPR001005 -
Ssu2g2726 213 CDD SANT 49 94 IPR001005 -
Ssu2g2726 213 Gene3D - 39 100 - -
Ssu2g2726 213 Gene3D - 103 176 - -
Ssu2g2726 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 94 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2726 Ssu-Chr2 87711950 87712966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2726 47 194 MYB Transcription Factor Family AT5G40330 52.632 2.58e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu2g2726 Myb_DNA-binding 5.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2726 K09422 - gmx:100791381 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2726 2 87711950 87712966 Ssu6g1640 6 27238654 27242488 PCT