Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2724 ATGGGAGAGGAAGACAGCGAAGTCCGTACAACTGCTTCCTCCACCTTCACCGAAGAGGGCATTATTAATTCAGAGAAGAAAAGTGAAGGCGAAGAAGCGAACGTTGAGAGTAACACGACGAAGAAGAGAAGTGGGAAGCACCCAACTTATCGCGGGGTTCGCATGCGTCAGTGGGGAAAATGGGTATCAGAAATAAGAGAGCCCAGAAAGAAGTCCAGAATTTGGCTCGGCACTTTTCCTACGCCAGAGATGGCGGCTCGAGCCCACGACATTGCGACTCTCACTATCAAAGGCACATCTGCTTTCCTTAATTTCCCCGAATTAGCCTCACACCTTCCACGCCCACCCACCACATCCCCTAAGGATATCCAAGCCGCCGCCGCCAAAGCAGCTACACTCAATTGTGAAGCCCAGGCCCAAGCCCAAGCCCAAGCCCAAGCCAAGCTGAGCCGATCAATTTCCTCCTCCCAACAATCATCGAATTCGTCGTTAAGCGGTGAGGATGACGCGTTCTTGGACCTCCCCGATCTTTTACTCGACTCAAGTTACAGTGCAGGTGAGTTTGGTTACTCTGCGCCGTGGCTCGTAGCTGGAGCTGAATATCTAGACTCGGGTTTCCGCCTCCAAGAGCCTCCTTTTTTCCCTTGGGAGTCTTActga 660 0.5197 MGEEDSEVRTTASSTFTEEGIINSEKKSEGEEANVESNTTKKRSGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDIATLTIKGTSAFLNFPELASHLPRPPTTSPKDIQAAAAKAATLNCEAQAQAQAQAQAKLSRSISSSQQSSNSSLSGEDDAFLDLPDLLLDSSYSAGEFGYSAPWLVAGAEYLDSGFRLQEPPFFPWESY 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2724 219 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Ssu2g2724 219 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Ssu2g2724 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 184 - -
Ssu2g2724 219 MobiDBLite consensus disorder prediction 1 51 - -
Ssu2g2724 219 MobiDBLite consensus disorder prediction 22 43 - -
Ssu2g2724 219 MobiDBLite consensus disorder prediction 7 21 - -
Ssu2g2724 219 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Ssu2g2724 219 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Ssu2g2724 219 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Ssu2g2724 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 17 184 - -
Ssu2g2724 219 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Ssu2g2724 219 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Ssu2g2724 219 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2724 Ssu-Chr2 87676697 87677356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2724 46 214 AP2-EREBP Transcription Factor Family AT2G44940 48.259 4.51e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu2g2724 AP2 2.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2724 - - gmx:100817503 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2724 2 87676697 87677356 Ssu6g1644 6 27407097 27407801 PCT