Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2720 ATGACGGTTGAGAAAGAAGATTTGGGTTTGAGTCTAAGCTTGAGCTTCCCTCAGAAACCCCCAACTCCTCTTCATCTCAATCTCGTGTCCTCTTCTACTtattcctcttctccttctggACACAACCCTCAGAAGCCCTCTTGGAACGAGGCTTTCACTTCTTCAGGTGAAGCTGGATCATTCCTCCGAGGAATCGATGTGAACCGGTTACCTTCTGGCGTTGATTGCGAAGAGGAAGCAGGTGTTTCATCTCCAAACAGCACGGTTTCTAGCGTGAGTGGAAAGCGTAGCGAAAGGGAAACCAATGGAGAAGAACACGACACAGACAGAGCTTGTTCCAGAGGCATCAGCGACGAAGAAGAGGGCGAAACCTCCAGGAAGAAACTTAGGCTCTCCAAAGACCAGTCAATTATTCTCGAAGAGAGCTTCAAAGAACACAACACTCTTAACCCCAAGCAAAAGTTGGCACTGGCGAAACAGCTGGGTCTTCGAGCAAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGGGCAAGGACCAAGCTGAAGCAAACGGAGGTGGACTGCGAGTTTTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAACAGGAGGTTGCAGAAGGAAGTACAGGAGCTTAGAGCACTCAAACTTTCCCCGCAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCCTCTTGCGAGCGTGTCGCGGTTCCCCCCTCAGCCGTTGATGCTGCCACGCGTCGCCATCACGTGCCCCCAGCTCACCCTCGGCCCTTCCCTTCCATTGGCCCATGGGCCTCCGCTGCCGCCCCTATTCCCCACAGGCCCTTCGATGCCCTCCGCCCCAGATCTTGA 870 0.523 MTVEKEDLGLSLSLSFPQKPPTPLHLNLVSSSTYSSSPSGHNPQKPSWNEAFTSSGEAGSFLRGIDVNRLPSGVDCEEEAGVSSPNSTVSSVSGKRSERETNGEEHDTDRACSRGISDEEEGETSRKKLRLSKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSAVDAATRRHHVPPAHPRPFPSIGPWASAAAPIPHRPFDALRPRS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2720 289 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Ssu2g2720 289 Coils Coil 181 218 - -
Ssu2g2720 289 MobiDBLite consensus disorder prediction 15 55 - -
Ssu2g2720 289 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Ssu2g2720 289 SUPERFAMILY Homeodomain-like 116 183 IPR009057 -
Ssu2g2720 289 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Ssu2g2720 289 CDD homeodomain 126 183 IPR001356 GO:0003677
Ssu2g2720 289 PRINTS Lambda-repressor HTH signature 153 162 IPR000047 GO:0003677
Ssu2g2720 289 PRINTS Lambda-repressor HTH signature 162 178 IPR000047 GO:0003677
Ssu2g2720 289 Pfam Homeobox associated leucine zipper 182 216 IPR003106 GO:0006355|GO:0043565
Ssu2g2720 289 PANTHER - 2 279 - -
Ssu2g2720 289 MobiDBLite consensus disorder prediction 81 96 - -
Ssu2g2720 289 MobiDBLite consensus disorder prediction 1 55 - -
Ssu2g2720 289 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 279 - -
Ssu2g2720 289 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Ssu2g2720 289 SMART HOX_1 124 186 IPR001356 GO:0003677
Ssu2g2720 289 CDD bZIP 175 214 - -
Ssu2g2720 289 MobiDBLite consensus disorder prediction 97 128 - -
Ssu2g2720 289 MobiDBLite consensus disorder prediction 76 128 - -
Ssu2g2720 289 Pfam HD-ZIP protein N terminus 3 100 IPR006712 GO:0005634
Ssu2g2720 289 Gene3D - 130 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2720 Ssu-Chr2 87587309 87588865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2720 1 289 Homeobox Transcription Factor Family AT5G47370 63.036 5.77e-115 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu2g2720 HD-ZIP_N 1.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2720 K09338 - gmx:100783851 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2720 2 87587309 87588865 Ssu6g1651 6 27594748 27595648 PCT