Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2715 ATGGCGAACCCCGTTGAAGTTTCTGCCCTCAATCGCATAAAACTGCATCTTCTAGGGGAACTCTCTCCCCTTCCATCGAGTCGAAAGCCGTCGCTTCAAATCTCTCTCCCGAAGAAGACCGAGTGGATCCAGTTCGGAGAGCCCGAGGCTGCGGAAACGGTGGCGCAGAGTCAGCAAAACGCGGAAGAGAAGAAGCACTACAGAGGGGTGCGACAGAGGCCGTGGGGGAAGTACGCGGCGGAGATCCGAGACCCGAACAAGCGCGGCTCCAGGGTGTGGCTCGGGACATTCGACACGGCTATCGAAGCCGCCAAAGCCTACGACCGAGCCGCCTTTAAGCTTCGCGGCTCCAAAGCTATCCTCAACTTCCCCCTCGAAGCCGGCGCCGATGACCGCAAACGCCGCCgcgaggaggaggaggaggtgggggAAGTGGAAGTCGTGAAGAGGGAAAAGATAGAGGAATCCGACGTTAGCCGTATTAAGGATACTCCGTTAACGCCGTCTAGCTGGTTAGGGTTCTGGGGCAGTGATGTAAACGGAATCTTCACCGTCCCGCCCTTGTCACCGTTATCTCCCCACCCGGCGTTGGGTTATCCACAGCTTATGGTTGTGTGA 618 0.5518 MANPVEVSALNRIKLHLLGELSPLPSSRKPSLQISLPKKTEWIQFGEPEAAETVAQSQQNAEEKKHYRGVRQRPWGKYAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEAGADDRKRRREEEEEVGEVEVVKREKIEESDVSRIKDTPLTPSSWLGFWGSDVNGIFTVPPLSPLSPHPALGYPQLMVV 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2715 205 SUPERFAMILY DNA-binding domain 66 126 IPR016177 GO:0003677
Ssu2g2715 205 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 27 190 - -
Ssu2g2715 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 27 190 - -
Ssu2g2715 205 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Ssu2g2715 205 Gene3D AP2/ERF domain 65 126 IPR036955 GO:0003700|GO:0006355
Ssu2g2715 205 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Ssu2g2715 205 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
Ssu2g2715 205 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Ssu2g2715 205 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
Ssu2g2715 205 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2715 Ssu-Chr2 87497896 87498813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2715 28 205 AP2-EREBP Transcription Factor Family AT5G47230 60.000 5.38e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu2g2715 AP2 2.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2715 K09286 - gmx:100808173 291.967