Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2714 ATGTACGAACAGAGTACCTACGAGTCCGATTTGGCCCTTTTGGACTCAATTCGCTGCCACTTACTAGGAGACTTCGAGGAGCACAAATTTGGAGCCCCGAATCTTAATTTGGGTAACACTCCGGTTTACTCTCGGAGCTCCAGTTTCGGCAAGTTGTACCCGTGTTTGAGTAACGACTGGGGCGAACTTCCTCTTAAGGAGGATGATTCAGAGGACATGGTGCTTTACGGTGTGCTTCGCGATGCCATCAACGTAGGGTGGGTCCCATCTCTCGACGCAGAGAGCTTCTCGTCGGGTTTCTTGCCGGCGGTGACCGTCAAACCCGAACCGGATCTATTTCCTGCTCCGGCACCCGTGTTTGCCCCTCCCGTGGTTGAGAAGGCTGCGCCGGCGGCGGTTCCGGCCAAGGGGAAGCACTACCGCGGCGTGCGGCAGCGGCCGTGGGGGAAATTCGCGGCGGAGATCCGCGACCCGGCTAAGAACGGGGCTCGGGTGTGGCTCGGGACTTTCGAAACGGCTGAGGACGCCGCGGTGGCTTACGACCGAGCCGCGTACCGAATGCGCGGCTCGCGGGCTTTGCTGAATTTCCCGCTCCGGATCAATTCGGGCGAGCCCGAACCGGTTCGGGTCACGGCGAAGCGGGCGTCGCCGGAGCCTTCGTCGGAGAGTGGGTCCTCGCCGAAGCGGAGGAAGAAGGTGGCGGGGCCCACGGTGACGGCCCAAGGTGGGTTGAGAACGGGGCAAGTGGGAAGTCAAGTGGCACAGTGCACACGTGGGCAGCAGTTATTGGTGAGCTAG 798 0.6115 MYEQSTYESDLALLDSIRCHLLGDFEEHKFGAPNLNLGNTPVYSRSSSFGKLYPCLSNDWGELPLKEDDSEDMVLYGVLRDAINVGWVPSLDAESFSSGFLPAVTVKPEPDLFPAPAPVFAPPVVEKAAPAAVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAAVAYDRAAYRMRGSRALLNFPLRINSGEPEPVRVTAKRASPEPSSESGSSPKRRKKVAGPTVTAQGGLRTGQVGSQVAQCTRGQQLLVS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2714 265 PANTHER BNAANNG21280D PROTEIN 26 244 - -
Ssu2g2714 265 CDD AP2 138 197 IPR001471 GO:0003700|GO:0006355
Ssu2g2714 265 Pfam AP2 domain 139 189 IPR001471 GO:0003700|GO:0006355
Ssu2g2714 265 SMART rav1_2 139 203 IPR001471 GO:0003700|GO:0006355
Ssu2g2714 265 MobiDBLite consensus disorder prediction 204 250 - -
Ssu2g2714 265 PRINTS Ethylene responsive element binding protein signature 163 179 IPR001471 GO:0003700|GO:0006355
Ssu2g2714 265 PRINTS Ethylene responsive element binding protein signature 140 151 IPR001471 GO:0003700|GO:0006355
Ssu2g2714 265 PANTHER DNA-BINDING DOMAIN 26 244 IPR044808 GO:0003700|GO:0009873
Ssu2g2714 265 SUPERFAMILY DNA-binding domain 139 199 IPR016177 GO:0003677
Ssu2g2714 265 ProSiteProfiles AP2/ERF domain profile. 139 197 IPR001471 GO:0003700|GO:0006355
Ssu2g2714 265 Gene3D AP2/ERF domain 138 200 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2714 Ssu-Chr2 87476185 87476982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2714 1 264 AP2-EREBP Transcription Factor Family AT4G17500 53.986 2.41e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu2g2714 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2714 K09286 - gmx:100819649 359.377