Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2713 ATGGGAGTGGAAAAGCGTGTGAGAAACTGGGCGCCACAAGCACATGAGCGTGTAAGTGAGAGAGTCAAAGAGATGAGAGTTGGAAAGCACAGAATATTTCCACGCAACTGCACTAGCAATTTCTCCGTGGCGTGCTTTACCCGACACTGCTTTTTGGACTCGGTCGCCTTGCCCTCGTCTTCCAAAGAAGAAACCAGTGATCATGTTGTCTACATCAAAACAAGAGTTAGTCCAGACTTTTATCCTGGTGCCGATTCaaagaaagaagatagaacTAAGCAAATTCTTTTGGGATCACTTATTGGCTCCCTTCTCCTTATAACTATTCTCCTGGCTGCGGCTGCTTGGTTTATTCTCCTGAAGCCGAAACTGAAAAGGGTTGTCCCAGCTGCAGCTAGTCTTTTGGAAACAAATTTGCATTCGTTTACGTATGAAACATTGGAAAAAGCCACATGGGGTTTTAGTGAGGAAATAGGCAGGGGTTCTTATGGCATTGTTTACAAAGGCCACCTAGAAGCAACTTCTTGTAACGTGGTTGCCGTCAAGAGATTGGACAGATTGGCACAAGAACGAGAGAAAGAATTTAGGACTGAATTGAGTTCCATTGGTAAAACCTGCCACAAAAATCTGGTCAGGTTGATCGGATTTTGTGACGAGGGAATCAATAGACTATTGGTCTACGAGTTCATGAGCAATGGTACTCTTGCAGACGTCCTATTTGCACAATCCAAACCCATCTGGAATGTAAGGGTTGGATTTGCTTTGGGGATCGCAAGAGGGTTGGTGTACTTACACGAAGAGTGTGACACTCCCATCATTCATTGTGATATTAAACCTCAAAATATACTCATAGATGAACATTTCAATACAAAGATCTCTGACTTTGGGTTGGCCAAATTGTTGTTGTCTGACCAAAGTAGAACCAATACCATGATCCGAGGAACTCGAGGATATGTGGCTCCTGAATGGTTCAAGAATGTTCCTGTGACGGTTAAAGTGGATGTTTACAGCTTTGGGGTAATGTTATTGGAAATTATTTGCTGCAGAAGAAGTGTGTTGATGATGGAGACCGGGAAAGAAGAGAAGGCAATACTGACAGATTGGGCATATGATTGCTATATGGAAGGAAGAATAGATGCTGTGGTTGAGAACGATGAGGAGGCCTTGTCTGACAATGGCAGGTTACAATAG 1191 0.4291 MGVEKRVRNWAPQAHERVSERVKEMRVGKHRIFPRNCTSNFSVACFTRHCFLDSVALPSSSKEETSDHVVYIKTRVSPDFYPGADSKKEDRTKQILLGSLIGSLLLITILLAAAAWFILLKPKLKRVVPAAASLLETNLHSFTYETLEKATWGFSEEIGRGSYGIVYKGHLEATSCNVVAVKRLDRLAQEREKEFRTELSSIGKTCHKNLVRLIGFCDEGINRLLVYEFMSNGTLADVLFAQSKPIWNVRVGFALGIARGLVYLHEECDTPIIHCDIKPQNILIDEHFNTKISDFGLAKLLLSDQSRTNTMIRGTRGYVAPEWFKNVPVTVKVDVYSFGVMLLEIICCRRSVLMMETGKEEKAILTDWAYDCYMEGRIDAVVENDEEALSDNGRLQ 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2713 396 Gene3D Transferase(Phosphotransferase) domain 1 230 393 - -
Ssu2g2713 396 Pfam Protein kinase domain 155 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2713 396 SUPERFAMILY Protein kinase-like (PK-like) 136 359 IPR011009 -
Ssu2g2713 396 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 40 396 - -
Ssu2g2713 396 ProSiteProfiles Protein kinase domain profile. 152 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2713 396 SMART serkin_6 152 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2713 396 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 40 396 - -
Ssu2g2713 396 ProSitePatterns Protein kinases ATP-binding region signature. 158 182 IPR017441 GO:0005524
Ssu2g2713 396 Gene3D Phosphorylase Kinase; domain 1 120 229 - -
Ssu2g2713 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2713 Ssu-Chr2 87438262 87441334 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2713 138 373 Receptor kinase-like Gene Family AT2G23950 45.643 5.10e-60 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu2g2713 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2713 - - gsj:114376498 530.02