Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2712 ATGCAAAATCAGAGGCCTACTTGCAACTGCCCTTATGGCTATTCACTGGTTGATCCAAGTAACGCATTTGGTGGATGTCAGCCCAATTTCACCCTCGCTTGTGGAGCGGATGTTCAAGCTCGGCCAGAAGAGCTATATGAAATGCATGAATccagaaattttaattttcctctGGGAGATTATGAAAAGATTCAACCTTACACTCAACAGGAATGCCAACAATCTTGCTTGCACGATTGCATGTGTGCTATGGCCATTTTAGGCGGCGACATTTGTTGGATGAAGAGATTGCCCCTCGGTAACGGAAGAGAAGTAGAACTCAGTGATCAACATTTTGTCTATATCAAAACAAGAGTTAGTCGTGACTTTAATCCTGGTGCAAATGGGGAACTTGCCCCTGCCCCTGGTCCTGATTCAAAGAAAGAAGGTCGAGCTAAACATATTCTTTTTGGATCACTTGTTGTCTCCCTTGTCGTTAACAGTATTCTTCTGGCTACGTTTGCTTTGTTTATTCTCTTGAAGCCGAAACTGAAAAAGGTTGTTGTACAAGCTGCTAGTCTTTTGGAAACAAATTTGTATTCGTTTACTTATGAAGCATTGGAAAAAGCCACGTGGGGTTTCAGTGAGGAAATAGGCAGGGGTTCCTTTGGCATTGTTTACAAAGGCCAACTTGAAGCAGCTTCTTGTAACGTGATTGCCGTTAAGAGACTGGACAGATTGGCACTTGAACGAGAGAAAGAATTTAGGACTGAATTGAGTGCCATTGGTAAAACCTGCCACAAAAATCTTGTAAGGTTGATTGGATTTTGTGACGAGGGAGTCAATAGACTATTGGTCTACGAGTTCATGAGCAATGGTACTCTTGCAGACATCCTATTTGGACAATCCAAGCCCATCTGGAATGTAAGGGTTGGATATGCTTCGGGGATTGCAAGGGGGTTGTTGTACTTACACGAAGAGTGTGACACTCCCATCATTCATTGTGATATAAAACCTCAAAATATACTCATAGATGAACATTTCAATGCAAAGATCTCTGACTTTGGGTTGGCCAAATTGTTGTTGTCTGCCCAAAGTAGAACCAATACCATGATCCGAGGAACTCGAGGATATGTGGCTCCTGAATGGTTCAAGAATGTTCCTGTGACGGTTAAAGTAGATGTTTACAGCTTTGGGGTAATGTTGTTGGAAATTATTTGCTGCAGAAGAAGTGCGTTGTTTGAGTCTGGGGAGGAAGAGAAGGCAGTATTAACAGATTGGGCTTATGATTGTTGTGTGGAAGGGAGGTTACATGCTTTGGTGGAGGACGATAAGGAGGCCTTGTCTGACATTGGCAGGTTAGAAAAGTGGGTAAAGATAGCAATATGGTGCATTCAAGAGCATCCTGAAATGAGGCCAACTATGGGGATGGTCATCCAAATGCTGGAAGGTTTGGTTGAAGTTCGTAACCCACCATCCCCTTTTCCTGATATTTGA 1476 0.4241 MQNQRPTCNCPYGYSLVDPSNAFGGCQPNFTLACGADVQARPEELYEMHESRNFNFPLGDYEKIQPYTQQECQQSCLHDCMCAMAILGGDICWMKRLPLGNGREVELSDQHFVYIKTRVSRDFNPGANGELAPAPGPDSKKEGRAKHILFGSLVVSLVVNSILLATFALFILLKPKLKKVVVQAASLLETNLYSFTYEALEKATWGFSEEIGRGSFGIVYKGQLEAASCNVIAVKRLDRLALEREKEFRTELSAIGKTCHKNLVRLIGFCDEGVNRLLVYEFMSNGTLADILFGQSKPIWNVRVGYASGIARGLLYLHEECDTPIIHCDIKPQNILIDEHFNAKISDFGLAKLLLSAQSRTNTMIRGTRGYVAPEWFKNVPVTVKVDVYSFGVMLLEIICCRRSALFESGEEEKAVLTDWAYDCCVEGRLHALVEDDKEALSDIGRLEKWVKIAIWCIQEHPEMRPTMGMVIQMLEGLVEVRNPPSPFPDI 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2712 491 ProSitePatterns Protein kinases ATP-binding region signature. 211 235 IPR017441 GO:0005524
Ssu2g2712 491 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Ssu2g2712 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 325 337 IPR008271 GO:0004672|GO:0006468
Ssu2g2712 491 CDD STKc_IRAK 211 478 - -
Ssu2g2712 491 Pfam Protein kinase domain 208 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2712 491 Gene3D Phosphorylase Kinase; domain 1 171 282 - -
Ssu2g2712 491 Pfam PAN-like domain 52 95 IPR003609 -
Ssu2g2712 491 SUPERFAMILY Protein kinase-like (PK-like) 189 476 IPR011009 -
Ssu2g2712 491 Gene3D Transferase(Phosphotransferase) domain 1 283 484 - -
Ssu2g2712 491 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 488 - -
Ssu2g2712 491 SMART serkin_6 205 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2712 491 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 488 - -
Ssu2g2712 491 ProSiteProfiles Protein kinase domain profile. 205 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2712 Ssu-Chr2 87398159 87399634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2712 139 480 Receptor kinase-like Gene Family AT5G45780 39.601 9.18e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu2g2712 Pkinase 5.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2712 - - gmx:100788734 791.956