Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2711 ATGCATGAATCGAGGGATTTTAATTTTCCTCGGGGAGATTATGAAAGGATACAACCCTACACTCAACAGGAATGCCAACAATCTTGCTTGCACGATTGCATGTGTGCTGTTGCCATTTTAGGCGGCGATAACACTTGTTGGAAGAAGAGATTGCCCCTTTCTAACGGTAGAGAAGAAGTCAGTGATCAACTTCTTGTCTATATCAAAACGAGAGTTACTCGCGACTTTTATCCTGGTGCAAACAGGGAGCTTCCCCCTGGTCATAATTCAAAGAAAGAAGATCGAGCAAAGCCAATTCTTTTGGGATCACTTATTGCCTCCCTTGTTGTTAACAGTATACTCCTGGCTACGTTTGCTTTGTTTAATCTCCTCAAGCAGAAAGTGAAAAGGGTTGTCGCAGCTCCTGCTAGTCTTTTGGAAACAAATTTGCATTCGTTTACTTATCAAACACTGGAAAAAGCCACGCGAGGATTTAGTGACGAAATAGGCAGGGGTTCTTATGGCATTGTTTACAAAGGCCAACTAGAAGCAGCTTCTTGTAACGTGGTTGCCGTTAAGAGATTGGACAGATCAGCACAAGAACGAGAGAAAGAATTTAGGACTGAATTGAGTGCCATTGGTAAAACCTGCCACAAAAATCTTGTAAGGTTGATTGGATTTTGTGACGAGGGAGTCAATAGACTATTGGTCTACGAGTTCATGACCAATGGTACTCTCGCAGACATCCTGTTTGCACAGTCCAAACCCATATGGAATGTAAGGGTTGGATTTGCTTTAGGGATTGCAAGAGGGTTGGTGTACTTACACGAAGAGTGCGACTCTCCCATCATTCATTGTGATATTAAACCTCAAAATATACTCATAGATGAACATTTCAATACAAGGATCTCTGACTTTGGGTTGGCCAAATTGTTGTTGTCTGACCAAAGTAGAACCAATACCATGATCCGAGGAACTCGAGGATATGTGGCCCCTGAATGGTTCAAGAATGTTCCTGTGACGGTTAAAGTGGATGTTTACAGCTTTGGGGTAATGTTGTTGGAAACTATTTGCTGCAGAAGAAGCGTGTTGATGAATGAGTCTGGGGAAGAAGAGAAGGCAGTACTGACAGATTGGGCTTATGATTGCTATATGGAAGGGAGAATAGATGCTGTGGTTGAGAACGATGAGGAGGCCTTGTCTGACAATGGAAGGTTACAAAAGTGGGTCAAAATAGCAATATGGTGCATTAATGAGCATCCTGAAATGAGGCCAACAATGGGGATGGTCATGCAAATGCTAGAAGGTTTTGTTGAAGTCCCTAACCCACCACCGCCTTTTCCCATACATTCGATGTCTTAA 1341 0.4273 MHESRDFNFPRGDYERIQPYTQQECQQSCLHDCMCAVAILGGDNTCWKKRLPLSNGREEVSDQLLVYIKTRVTRDFYPGANRELPPGHNSKKEDRAKPILLGSLIASLVVNSILLATFALFNLLKQKVKRVVAAPASLLETNLHSFTYQTLEKATRGFSDEIGRGSYGIVYKGQLEAASCNVVAVKRLDRSAQEREKEFRTELSAIGKTCHKNLVRLIGFCDEGVNRLLVYEFMTNGTLADILFAQSKPIWNVRVGFALGIARGLVYLHEECDSPIIHCDIKPQNILIDEHFNTRISDFGLAKLLLSDQSRTNTMIRGTRGYVAPEWFKNVPVTVKVDVYSFGVMLLETICCRRSVLMNESGEEEKAVLTDWAYDCYMEGRIDAVVENDEEALSDNGRLQKWVKIAIWCINEHPEMRPTMGMVMQMLEGFVEVPNPPPPFPIHSMS 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2711 446 SUPERFAMILY Protein kinase-like (PK-like) 139 428 IPR011009 -
Ssu2g2711 446 SMART serkin_6 156 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2711 446 Gene3D Transferase(Phosphotransferase) domain 1 234 437 - -
Ssu2g2711 446 ProSitePatterns Protein kinases ATP-binding region signature. 162 186 IPR017441 GO:0005524
Ssu2g2711 446 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 444 - -
Ssu2g2711 446 CDD PAN_AP_plant 5 70 - -
Ssu2g2711 446 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 444 - -
Ssu2g2711 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Ssu2g2711 446 Pfam Protein kinase domain 160 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2711 446 ProSiteProfiles Protein kinase domain profile. 156 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2711 446 CDD STKc_IRAK 162 430 - -
Ssu2g2711 446 Gene3D Phosphorylase Kinase; domain 1 120 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2711 Ssu-Chr2 87371316 87372656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2711 90 432 Receptor kinase-like Gene Family AT5G45780 37.784 8.43e-69 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu2g2711 Pkinase 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2711 - - gsj:114376498 719.539