Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2710 ATGCAACCTTGCTCTCAACAGGACTGCCAACAATCTTGCTTGCATGATTGCATGTGTGCTGTTGccatttttaagaatgaaactTGTTGGAAGAAAAGATTACCTATGGCTAATGGAAGAGTACAGAGTGGCGGTGGTCAATTAGTCCTCATAAAAACAAGAGTTGCTCCTGTGCGTAACCTTGGTCCTTCTACTGCTCCTAATTCAAGGAAAAATGATCGAGTCAAGCCACTTCTTCAAGGTTTGCTTATTGGCTCCACGGTCATTAACAGCATACTTGTGGCTATGGTCGTTTTGATTATTGTCTTGAAGCCAAAAAGGATTGTGCAAGCAACAAGTCTTCTGGAAACAAATTTGCATTCGTTTAGTTATGAAGCATTGAAAGAGGCCACATGGGGTTTTAGTGAAGAACTAGGCAGGGGTTCCTTTGGCATTGTTTACAAAGGCAAACTAGAAGCAGTGTCTTGTAACGTGGTTGCTGTCAAGAGATTGGACAGATTAGCACAAGAACGAGAGAAGGAATTTAGGACTGAGCTGAGTGCCATTGGTAGAACCTGTCACAAAAATCTGGTTAGGTTGGTTGGATTTTGTGACGAGGGAATCCATAGACTATTGGTCTACGAGTTCATGACCAATGGTACTCTTGCAGACATCCTATTTGGACAATCCAAACCCATCTTGAATGTAAGGGTTGGATTTGCTTTGGGGATTGCAAGAGGGTTGGTATACTTACACGAAGAGTGTGACACTCCTATCATTCATTGTGATATTAAACCTCAAAATATACTCATAGATGAACATTTCAATGCAAAGATCTCTGACTTTGGGTTGGCCAAGTTGTTGATGTCTAACCAAAGTAGAACCAATACCATGATCCGAGGAACTCGAGGATATGTGGCTCCTGAATGGTTCAAAAATGTTGCTGTGACAGTTAAAGTGGATGTTTACAGCTTTGGGGTAATGCTGTTGGAAATTATTTGCTGCAGAAGAAGTGTGTTGATGATGGAGACCGGGAAAGAAGAGAAGGCAATACTGACAGATTGGGCATATGATTGCTATATGGAAGGAAGAATAGATGCTGTGGTGGAGAACGATGAGGAGGCCTTGTCTGACAATGGCAGGTTACAAAAGTGGATCAAAATAGCCATATGGTGCATTAATGAGCATCCTGAAATGAGGCCAACAATGGGGATGGTCATGCAAATGCTAGAAGGCTTTGTTGAAGTCCCTAACCCACCACCGCCATTTCCCGTACATTCCATATCTTAA 1269 0.4177 MQPCSQQDCQQSCLHDCMCAVAIFKNETCWKKRLPMANGRVQSGGGQLVLIKTRVAPVRNLGPSTAPNSRKNDRVKPLLQGLLIGSTVINSILVAMVVLIIVLKPKRIVQATSLLETNLHSFSYEALKEATWGFSEELGRGSFGIVYKGKLEAVSCNVVAVKRLDRLAQEREKEFRTELSAIGRTCHKNLVRLVGFCDEGIHRLLVYEFMTNGTLADILFGQSKPILNVRVGFALGIARGLVYLHEECDTPIIHCDIKPQNILIDEHFNAKISDFGLAKLLMSNQSRTNTMIRGTRGYVAPEWFKNVAVTVKVDVYSFGVMLLEIICCRRSVLMMETGKEEKAILTDWAYDCYMEGRIDAVVENDEEALSDNGRLQKWIKIAIWCINEHPEMRPTMGMVMQMLEGFVEVPNPPPPFPVHSIS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2710 422 SUPERFAMILY Protein kinase-like (PK-like) 116 404 IPR011009 -
Ssu2g2710 422 ProSiteProfiles Protein kinase domain profile. 132 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2710 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Ssu2g2710 422 ProSitePatterns Protein kinases ATP-binding region signature. 138 162 IPR017441 GO:0005524
Ssu2g2710 422 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 420 - -
Ssu2g2710 422 Gene3D Transferase(Phosphotransferase) domain 1 210 408 - -
Ssu2g2710 422 SMART serkin_6 132 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2710 422 Pfam Protein kinase domain 135 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2710 422 Gene3D Phosphorylase Kinase; domain 1 99 209 - -
Ssu2g2710 422 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2710 Ssu-Chr2 87345187 87346455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2710 53 408 Receptor kinase-like Gene Family AT5G45780 38.315 4.26e-70 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu2g2710 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2710 - - gmx:100789263 628.632