Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2706 ATGGCCTATAGATTAAGGCCAAAAAGGCAAAATGTAGCCTATGCAGATCCATATGCAGATTCAACCGATACTGAAAGTGACTCAAACAATCATGATCAAGATTATTCAAGATTCAGGCCTAGAAAACCAACTAAAAGAAGGAATGCAACACCATCCACAAGAAGAACAATGAAGACTGAAATGGTGGACTCGGGGGTGAATTCAAATGCAAAGCGTAGACGGGGTACAAGGAGCCACCCTTCTAAGAAGACAGCAGCTGGAGGACAAAACAAGGAAGCTAGTAGGGTGGGACAAAGTTCAAGGATGGAAAGAGGTTCAATTTTACGGGAAAGCCCCAGTCCAACCACAGAGAACGGTACACCTTCACCTGTACGACAAGGTTCACCTTCACCTTGTAAAAAGACGGGAGATGAAGGACACAACAATGAAACTGGTGAAGTTGGACAAAGTTTAGGCAtggaaaaaagtatatttttaccAGAAGACACAAGTTCGAGCATGGGGAATACTTCACCTTCACCTGTAGGACAAGATTCACCTTCAACCTTACAGAAAACGTTAGAGGAAGGATCAAACAAGGAAACTAGAGGAGTTGGAAAAAGttcaagaaaggaaaaaggttCATTTTCACAGGAAGGCCCACATCCAAGCACAGAGAACAGTTTACCTTCAACTGAAGGACACAGTTCAAGCATGAAAAGAGTTTCATCTTTACCCGAAGGAACAAGTTCAAGCCAAAAAACCATTTTGTCATGGTTAATAGATTGTAAGACTATTGAGGAAGATGAACAAGTATACTATAAGGATGACACAAAGGAAAGTGCACCAATAACTGGAGCAATTACCAGGGTTGGAATTCTCTGCAGCTGTTGCCAGGAGGAAATATCTGTGTGGACATTCGAGAAACATGCTGATAGTGATCTCAAAAAACCCTATAAACATATTTGCCTCCCCAAAAAAGGCACATGTCTCCGGGACAGCATGACTACTGCTTGGTATAAATCCACAGAACAAAAAAGCCGGGAACCATTTGACTATACATTGAAAGAGCAAAACAATAGTGCTTGTTTAATCTGTGGAGATGGGGGAGACTTATTCTACTGTACGAATAAGAAATGTCAGTCCGCATACCATGCATTCTGTATGAATATGAAgAGGGTTCCCCGTGGCACTTGGAATTGTCCCTACTGCCTTTGCAAATACTGTGGTCTTGAATGTCAACTGCAACCAATCACATGCTTGCAGTGTGACAAAATCTTTCACTTGGAATGTTTTAACAAATTCTCAAAAGAATCCAGTGAGATTTCATCTTCGAGATTGTATTGCACTCAAAGCTGCAAAGAGATCTATGAGAAATTGGAGAGTTCACTTGCAGCAAGAACTGATATCGGGGAAGGCAACTCTTGGAGAGTCATCCAACCAATGGATATGATTTCCAAGTTGCATATAGCTAGGACACTACgtttggaaaataatttgaaggtTGCAGTGGCTTTTACATTAATGAATGAATCTTTCAAGACAATAACTGACAGAGACACAGGCATTGATGTGGTTCATGGCGTACTATACAGTCGTCGATCGGACTTAAAGAGAAtcaattttagtcattttcatACATTTATCCTAGAGAAAGACGATGCAATCATCTGCGCAGCTTCTATAAGAATTCATGGGAGAAGGGTTGCAGAAATGCCCTTTATTGCCACAGATGAGCCATTCAGGGGCCAAGGATTTTGCAGCAAGTTAATGACAGCAATTGAATCGTACTTGCATGACCTTAAAGTACAAAACCTTATCATTCCAGCTGTTCCAGATACTTCCGAGATGTGGAAGGTCAAGTATGGATTCAAAGAGCTGACTAGAGAGCTTAAGAGAGAAGTTAGCTCCTACAATATTTTGAAGCTAACTAATACTGAGAAACTGTACAAAGATTTGAGCTCACTTGACAGACAAACTGAGATTCACAATGCCCAGCAAACACAAAACGATAACACACAGAGGGCATTATTAGACTTGAATATGGACCCCGCCTGA 2037 0.3986 MAYRLRPKRQNVAYADPYADSTDTESDSNNHDQDYSRFRPRKPTKRRNATPSTRRTMKTEMVDSGVNSNAKRRRGTRSHPSKKTAAGGQNKEASRVGQSSRMERGSILRESPSPTTENGTPSPVRQGSPSPCKKTGDEGHNNETGEVGQSLGMEKSIFLPEDTSSSMGNTSPSPVGQDSPSTLQKTLEEGSNKETRGVGKSSRKEKGSFSQEGPHPSTENSLPSTEGHSSSMKRVSSLPEGTSSSQKTILSWLIDCKTIEEDEQVYYKDDTKESAPITGAITRVGILCSCCQEEISVWTFEKHADSDLKKPYKHICLPKKGTCLRDSMTTAWYKSTEQKSREPFDYTLKEQNNSACLICGDGGDLFYCTNKKCQSAYHAFCMNMKRVPRGTWNCPYCLCKYCGLECQLQPITCLQCDKIFHLECFNKFSKESSEISSSRLYCTQSCKEIYEKLESSLAARTDIGEGNSWRVIQPMDMISKLHIARTLRLENNLKVAVAFTLMNESFKTITDRDTGIDVVHGVLYSRRSDLKRINFSHFHTFILEKDDAIICAASIRIHGRRVAEMPFIATDEPFRGQGFCSKLMTAIESYLHDLKVQNLIIPAVPDTSEMWKVKYGFKELTRELKREVSSYNILKLTNTEKLYKDLSSLDRQTEIHNAQQTQNDNTQRALLDLNMDPA 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2706 678 MobiDBLite consensus disorder prediction 656 670 - -
Ssu2g2706 678 MobiDBLite consensus disorder prediction 189 210 - -
Ssu2g2706 678 MobiDBLite consensus disorder prediction 211 243 - -
Ssu2g2706 678 MobiDBLite consensus disorder prediction 82 129 - -
Ssu2g2706 678 MobiDBLite consensus disorder prediction 25 39 - -
Ssu2g2706 678 MobiDBLite consensus disorder prediction 54 71 - -
Ssu2g2706 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 414 IPR013083 -
Ssu2g2706 678 CDD NAT_SF 541 601 - -
Ssu2g2706 678 Pfam Acetyltransferase (GNAT) family 534 596 IPR000182 GO:0016407
Ssu2g2706 678 PANTHER GNAT FAMILY ACETYLTRANSFERASE 185 660 - -
Ssu2g2706 678 Pfam Tify domain binding domain 279 328 IPR032308 -
Ssu2g2706 678 ProSiteProfiles Zinc finger PHD-type profile. 353 400 IPR019787 -
Ssu2g2706 678 PANTHER PHD FINGER PROTEIN 12 185 660 IPR042163 GO:0003714|GO:0045892
Ssu2g2706 678 SMART PHD_3 355 398 IPR001965 -
Ssu2g2706 678 SMART PHD_3 399 447 IPR001965 -
Ssu2g2706 678 MobiDBLite consensus disorder prediction 1 243 - -
Ssu2g2706 678 Gene3D - 491 632 - -
Ssu2g2706 678 MobiDBLite consensus disorder prediction 159 188 - -
Ssu2g2706 678 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 532 621 IPR016181 -
Ssu2g2706 678 MobiDBLite consensus disorder prediction 656 678 - -
Ssu2g2706 678 SUPERFAMILY FYVE/PHD zinc finger 337 399 IPR011011 -
Ssu2g2706 678 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 497 637 IPR000182 GO:0016407
Ssu2g2706 678 CDD PHD5_NSD 356 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2706 Ssu-Chr2 87324292 87327326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2706 165 646 PHD Transcription Factor Family AT4G14920 35.010 5.39e-87 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2706 - - aprc:113870228 699.123