Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2692 ATGGGCAAGGAAGGACCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGCAATGGACCACCTGAGAAGCCAGTACTGTGCAATGCATGTGGGTCTCGATGGAGGACAAAGGGAACTCTTGCAAATTATACCCCTTTACATGCTCGAGCAGAAACTGATGATTACGAGGATCAAAGGGTTTCCAGGGTAAAGAGCATATcgttaaataagaagaaagaagtggCATTGCTCAAACGAAAGCAGAACCATGATAATGTAGTATCTAGAGGGTTTGCACCTGATTATAACCAGGGATTCCAAAAGGTTGTAGATGAAGATACAAGCAACAGGTCGAGTTCAGGATCAGCTATCTCTAACTCAGAGAGCTGTGCACAATTTGGTCATGGTGGCATGGATGCTAGTGATCTGACAGGTCCTGCTCAATCAGTGGTCTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGTTGGTCGTCCAAAGCCTTCTTCTGTTGAGAAGCTAACAAAAGATTTATGTACTATTCTTCATGAACAACagtcttatttttcttcatcttctgAAGAAGATCTTCTATTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTCATTAGGCATCCTAGCTATATAGCCCGTGAAGAAGAGTCTGAGGCTAACTCTCTTTCAGTTGATAATAAACAATGCCCAGTGAGTGAGGCATATTCTTATTCTGGTGCCGTTCTAATGCATAATGATTCTAGTGGGATGAAGTCATCATCTCTGGAAGTTGAAAAGATCAGGAACTCTACTGACCAAGGAAAGCAGCAGGAGCAACTTAAAAGtGACAAGTCTCAACTTGAAAGAGTACAAATCCTTGGAGATCATGAATCGCCACTCATGCTTGATTCTTTAAACTTTGTTGAGGAGAGTACTGTTCAGGATCTGCTGCTAGAGGTGCCATCTAACACTTCTTTTCCACAGGCAGAGCTCTTGCACCCAACTTTAAGGCTTGGTGCTCATGCCAGCACTAGTAGTAGCTCAGTCTACTCACATTTTAATCACCATTAA 1074 0.4153 MGKEGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDDYEDQRVSRVKSISLNKKKEVALLKRKQNHDNVVSRGFAPDYNQGFQKVVDEDTSNRSSSGSAISNSESCAQFGHGGMDASDLTGPAQSVVWDAMVPSKKRTCVGRPKPSSVEKLTKDLCTILHEQQSYFSSSSEEDLLFESETPMVSVEIGHGSVLIRHPSYIAREEESEANSLSVDNKQCPVSEAYSYSGAVLMHNDSSGMKSSSLEVEKIRNSTDQGKQQEQLKSDKSQLERVQILGDHESPLMLDSLNFVEESTVQDLLLEVPSNTSFPQAELLHPTLRLGAHASTSSSSVYSHFNHH 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2692 357 PANTHER GATA TRANSCRIPTION FACTOR 26 300 356 - -
Ssu2g2692 357 Gene3D - 4 87 IPR013088 GO:0006355|GO:0008270
Ssu2g2692 357 MobiDBLite consensus disorder prediction 256 286 - -
Ssu2g2692 357 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Ssu2g2692 357 PANTHER OSJNBB0038F03.10 PROTEIN 300 356 IPR044589 -
Ssu2g2692 357 PANTHER OSJNBB0038F03.10 PROTEIN 1 302 IPR044589 -
Ssu2g2692 357 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Ssu2g2692 357 PANTHER GATA TRANSCRIPTION FACTOR 26 1 302 - -
Ssu2g2692 357 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Ssu2g2692 357 MobiDBLite consensus disorder prediction 269 286 - -
Ssu2g2692 357 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Ssu2g2692 357 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Ssu2g2692 357 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2692 Ssu-Chr2 87140555 87143826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2692 1 310 C2C2-Gata Transcription Factor Family AT4G17570 59.375 4.64e-106 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu2g2692 GATA 3.3e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2692 - - gmx:100803914 551.977