Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2691 ATGGGCAAGGAAGGACCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGCAATGGACCACCCGAGAAGCCAGTACTGTGCAATGCATGTGGGTCTCGATGGAGGACAAAGGGAACTCTTGCAAATTATACCCCTTTACATGCTCGAGCAGAAACTGATGATTACGAGGATCAAAGGGTTTCCAGGGTAAAGAGCATATcgttaaataagaagaaagaagtggCATTGCTCAAACGAAAGCAGAACCATGATAATGTAGTATCTAGAGGGTTTGCACCTGATTATAACCAGGGATTCCAAAAGGTTGTAGATGAAGATACAAGCAACAGGTCGAGTTCAGGATCAGCTATCTCTAACTCAGAGAGCTGTGCACAATTTGGTCATGGTGGCATGGATGCTAGTGATCTGACAGGTCCTGCTCAATCAGTGGTCTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGTTGGTCGTCCAAAGCCTTCTTCTGTTGAGAAGCTAACAAAAGATTTATGTACTATTCTTCATGAACAACagtcttatttttcttcatcttctgAAGAAGATCTTCTATTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTCATTAGGCATCCTAGCTATATAGTCCGTGAAGAAGAGTCTGAGGCTAACTCTCTTTCAGTTGATAATAAACAATGCCCAGTGAGTGAGGCATATTCTTATTCTGGCACCGTTCTAATGCATAATGATTCTAGTGGCATGAAGTCATCATCTCTGGAAGTTGAAAAGATCAGGAACTCTATCGGCCAAGGAAAGCAGCAGGAGCAACTTAAAAGtgACAAGTCTCAACTTGAAAGAGTACAAATCCTTGGAAATCATGAATCGCCACTCATGCTTGATTCTTTACACTTTGTTGAGGAGAGTACTGTTCAGGATCTGCTGCTAGAGGTGCCATCTAACACTTCTTTTCCACAGGCAGAGCTCTTACACCCAACTTTAAGGCTTGGTGCCCAAGCCAGCACTAGTAGTAGCTCAGTCTACTCACATCTTAATCAccattaa 1074 0.4143 MGKEGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDDYEDQRVSRVKSISLNKKKEVALLKRKQNHDNVVSRGFAPDYNQGFQKVVDEDTSNRSSSGSAISNSESCAQFGHGGMDASDLTGPAQSVVWDAMVPSKKRTCVGRPKPSSVEKLTKDLCTILHEQQSYFSSSSEEDLLFESETPMVSVEIGHGSVLIRHPSYIVREEESEANSLSVDNKQCPVSEAYSYSGTVLMHNDSSGMKSSSLEVEKIRNSIGQGKQQEQLKSDKSQLERVQILGNHESPLMLDSLHFVEESTVQDLLLEVPSNTSFPQAELLHPTLRLGAQASTSSSSVYSHLNHH 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2691 357 PANTHER GATA TRANSCRIPTION FACTOR 26 1 302 - -
Ssu2g2691 357 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Ssu2g2691 357 PANTHER OSJNBB0038F03.10 PROTEIN 1 302 IPR044589 -
Ssu2g2691 357 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Ssu2g2691 357 PANTHER GATA TRANSCRIPTION FACTOR 26 300 357 - -
Ssu2g2691 357 Gene3D - 4 87 IPR013088 GO:0006355|GO:0008270
Ssu2g2691 357 PANTHER OSJNBB0038F03.10 PROTEIN 300 357 IPR044589 -
Ssu2g2691 357 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Ssu2g2691 357 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Ssu2g2691 357 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Ssu2g2691 357 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2691 Ssu-Chr2 87111240 87114530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2691 1 310 C2C2-Gata Transcription Factor Family AT4G17570 59.062 1.47e-105 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu2g2691 GATA 3.3e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2691 - - gmx:100803914 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2691 2 87111240 87114530 Ssu6g1671 6 27959412 27963191 PCT