Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2688 ATGAACACTGATAAAGAACCTGAAGATCAGAAGCTTGAGCGGGGCAATCTTGCTTTGAAGAACAGTAGTGAGGAAAAGAATCCTGTTAGGGTGATACGTGGCTCTGAATCAATGGATGGAAAGTGCAAGACATATGTTTATGATGGACTGTATGTAGTTGAGTCATGTTGGCAGGATATGGGACCACATGGTAAGCTGGTTTATAGGTTTCGCCTGCGAAGAATCCCTGGTCAACCAGAGCTTGCTTTGAAAGAAGTAAAGAAATCTAAAAAGTTCAAAACTAGAGATGGTCTATGTGTTGATGATATTTCTCATGGAAAAGAACGAATTCCCATATGTGCTGTGAACACCATAGATGATGAAAAACCCCCTCCGTTTAATTACATAACTAGCATGTTATACCCCAATAGCCATCCCGTTCCTCCACAAGGATGTGATTGTACTAATGGATGCTCTGACTTGGAGAAATGTTCATGTGTAGTAAAAAATGGGGGAGAGATCCCATTCAATCACAATGAGGCTATTGTACAAGCAAAGCCTCTAGTCTATGAGTGTGGACCTACTTGTAAGTGTCCTTCAACATGCCATAATAGAGTCAGCCAACTTGGTATAAAGTTTcaacttgaaatttttaaaaccaatacAAGGGGATGGGGTGTGAGATCCCTGAATTCAATCCCTTCAGGAAGTTTTATCTGCGAATATATAGGAGAGCTTCTTGAAGAAAAGGAAGCTGAAGAAAGAACTGGTAATGATGAGTATCTTTTTGATATTGGAAATAACTACAGCAACAGTACTCTTTGGGATGGACTTTCGACCCTCATGCCTGAAGCACAGACAAGTCCTTGTGAAGTTGTGAAGGATGGTGGGTTCACCATTGACGCAGCTCAGTTTGGTAATGTGGGGAGATTCATTAACCATAGTTGCTCCCCTAATCTTTATGCTCAAAATGTCCTTTATGATCATCATGACACCAGGATGCCTCATATAATGTTCTTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTGACCTACGATTACAATTATGCAATAGATGAAGTCCGTGATTCTGATGGCAATATAAGAAAGAAGTATTGCTATTGTGGTTCTGCGGAATGTACTGGCAGGATGTATTGA 1140 0.4018 MNTDKEPEDQKLERGNLALKNSSEEKNPVRVIRGSESMDGKCKTYVYDGLYVVESCWQDMGPHGKLVYRFRLRRIPGQPELALKEVKKSKKFKTRDGLCVDDISHGKERIPICAVNTIDDEKPPPFNYITSMLYPNSHPVPPQGCDCTNGCSDLEKCSCVVKNGGEIPFNHNEAIVQAKPLVYECGPTCKCPSTCHNRVSQLGIKFQLEIFKTNTRGWGVRSLNSIPSGSFICEYIGELLEEKEAEERTGNDEYLFDIGNNYSNSTLWDGLSTLMPEAQTSPCEVVKDGGFTIDAAQFGNVGRFINHSCSPNLYAQNVLYDHHDTRMPHIMFFAAENIPPLQELTYDYNYAIDEVRDSDGNIRKKYCYCGSAECTGRMY 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2688 379 ProSiteProfiles Post-SET domain profile. 363 379 IPR003616 -
Ssu2g2688 379 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 4 378 - -
Ssu2g2688 379 ProSiteProfiles Pre-SET domain profile. 143 203 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu2g2688 379 Gene3D - 1 94 IPR036987 -
Ssu2g2688 379 SMART preset_2 100 190 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu2g2688 379 Gene3D SET domain 95 379 IPR046341 -
Ssu2g2688 379 ProSiteProfiles YDG domain profile. 1 74 IPR003105 -
Ssu2g2688 379 SUPERFAMILY PUA domain-like 2 105 IPR015947 -
Ssu2g2688 379 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 4 378 - -
Ssu2g2688 379 Pfam SET domain 217 349 IPR001214 GO:0005515
Ssu2g2688 379 Pfam Pre-SET motif 103 198 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu2g2688 379 SMART set_7 206 355 IPR001214 GO:0005515
Ssu2g2688 379 MobiDBLite consensus disorder prediction 1 27 - -
Ssu2g2688 379 ProSiteProfiles SET domain profile. 206 349 IPR001214 GO:0005515
Ssu2g2688 379 SMART G9a_1 1 78 IPR003105 -
Ssu2g2688 379 Pfam SAD/SRA domain 5 78 IPR003105 -
Ssu2g2688 379 SUPERFAMILY SET domain 91 355 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2688 Ssu-Chr2 87082901 87084040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2688 2 376 Su(var)3-9 homologs AT5G04940 41.538 1.12e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu2g2688 SET 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2688 K11420 - gmx:100803378 727.628