Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2687 ATGGAACTTAATTTTAAGCACCAACTCGGCCTTCTCTGTGTCACACTGCTCTTACCTGCCCTGTATACCTCTCAGGACTCTTTTACTTGCTCCAGAGCAACCTATTATGGTAGCCCAGATTGCTATGGAAATCCAAGGGGAGCTTGTGGCTTTGGCGAATATGGAAAAACGGTAAACGATGGCAATGTTGCAGGCGTGTCTTGGCTATGGAGGAATGGATCTGGCTGCGGAGCATGTTATCAGGTTAGGTGCAAAATACCACAATTCTGCGATGAGAATGGAGCATACGTAGTGGTGACAGATTATGGTGAGGGAGACAGAACAGACTTTATAATGAGTCCACGTGCCTACTCAAGATTGGGGAGAAACGCAGATGCATCTGCAGAGCTTTTCAAATACGGTGTGGTGGATGTAGAATACAGAAGGGTACCCTGCAGATACGGTGGCTATAACCTCTTGGTTAAGGTCCATGAACACAGCAGAAACCCTCACTACTTAGCCATTGTCATTCTCTACGTTGGTGGAACTTACGACGTAACTGCTGTTGAGTTGTGGCAGGAAGATTGCCAAGAGTGGAGGCGAATGCGCAGGGCATTTGGGACGGTGTTTGACGCTGAGAACCCGCCAAGGGGTGACATCAAGTTGAGATTCCAATTGAGTGGTAATGCAGAGCAGTATTGGGTGCAATCCAAGAATGTTATCTCTAGTAATTGGGAGGCAGGAGCTGTTTATGACTCGGAAATTCAGCTtggttaa 756 0.4683 MELNFKHQLGLLCVTLLLPALYTSQDSFTCSRATYYGSPDCYGNPRGACGFGEYGKTVNDGNVAGVSWLWRNGSGCGACYQVRCKIPQFCDENGAYVVVTDYGEGDRTDFIMSPRAYSRLGRNADASAELFKYGVVDVEYRRVPCRYGGYNLLVKVHEHSRNPHYLAIVILYVGGTYDVTAVELWQEDCQEWRRMRRAFGTVFDAENPPRGDIKLRFQLSGNAEQYWVQSKNVISSNWEAGAVYDSEIQLG 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2687 251 Pfam Expansin C-terminal domain 154 234 IPR007117 -
Ssu2g2687 251 SUPERFAMILY PHL pollen allergen 152 246 IPR036749 -
Ssu2g2687 251 PANTHER EXPANSIN-B3 4 250 - -
Ssu2g2687 251 SUPERFAMILY Barwin-like endoglucanases 13 149 IPR036908 -
Ssu2g2687 251 Gene3D - 19 145 IPR036908 -
Ssu2g2687 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Ssu2g2687 251 Gene3D - 146 247 IPR036749 -
Ssu2g2687 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Ssu2g2687 251 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 250 - -
Ssu2g2687 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Ssu2g2687 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Ssu2g2687 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Ssu2g2687 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Ssu2g2687 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Ssu2g2687 251 Pfam Lytic transglycolase 63 140 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2687 Ssu-Chr2 87073993 87076378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2687 3 250 Expansin Gene Family AT4G17030 61.355 7.09e-112 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2687 - - gmx:100802855 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2687 2 87073993 87076378 Ssu6g1676 6 28067212 28069134 PCT