Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2680 ATGAATCCATGGAACCTGACAACTACCAAGTTACTCTCTCAACAAGTTGCTTATCCTCCTCACCTCTTTGTAGAAGAGATTCCTAGCTTGGGAAATTCCAGTGTAAACAAGGGTGTGACCAAGGAGCCTAGAGGTTCACAGATGACAATCTTTTATGATGGCCAAGTTATTGTCTTTGAGGATATTCAAGCTGACAAAGTCAAGGACATCATGTCTTTTGCCAGCACAGGAATGTCTCAAAACCAGAACGACTATGCTTATACATTCCCTGCTACAAATTCTGCAAGTTCCAGTGGACCGTTTCCTTTTCTTATGAATATCATCCCTAGCACTGCCAACAATTCGGTTCAAGAGCACCCTCAAGCACCCTCCAAACCTGTTATTCGTGGTAATTCTTTTAGATCTCTCATATTTGACAAGATGGGAGATTTGTGTCTCGGTTTATGCATCTCTGATCCATCACTTTGTGTTCCTTTTTATTCAGATCTACCAATGGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATTGCTGCCAGAGCACCATATCAAGCAAGCAATCCCACGGCATTCCCTAATAAGCCAGCTAAATCCATGCCATGGCTCACCTTGGCACCTAACTCACCACAAGACGAATCTGATTCCGAGAGCAACTCTAGCTTTGTgttattttaa 690 0.4232 MNPWNLTTTKLLSQQVAYPPHLFVEEIPSLGNSSVNKGVTKEPRGSQMTIFYDGQVIVFEDIQADKVKDIMSFASTGMSQNQNDYAYTFPATNSASSSGPFPFLMNIIPSTANNSVQEHPQAPSKPVIRGNSFRSLIFDKMGDLCLGLCISDPSLCVPFYSDLPMARKASLHRFLEKRKDRIAARAPYQASNPTAFPNKPAKSMPWLTLAPNSPQDESDSESNSSFVLF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2680 229 MobiDBLite consensus disorder prediction 190 229 - -
Ssu2g2680 229 ProSiteProfiles Tify domain profile. 41 76 IPR010399 -
Ssu2g2680 229 Pfam tify domain 43 75 IPR010399 -
Ssu2g2680 229 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 5 210 IPR040390 -
Ssu2g2680 229 SMART tify_2 41 76 IPR010399 -
Ssu2g2680 229 MobiDBLite consensus disorder prediction 208 229 - -
Ssu2g2680 229 PANTHER PROTEIN TIFY 10A 5 210 - -
Ssu2g2680 229 Pfam Jas motif 164 189 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2680 Ssu-Chr2 87004091 87005209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2680 30 210 Tify Gene Family AT1G19180 31.551 5.52e-21 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ssu2g2680 tify 5.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2680 K13464 - gmx:100306332 291.967