Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2678 ATGGAAGAACGGTACGAGACATTGAAGGAGCTTGGTTCGGGGAACTTCGGAGTGGCAAGGTTGGCCAAAGACAAGAAGACAGGGGACCTTGTTGCTATCAAATACAtagaaaggggaaaaaagATTGATGCGAATGTTCAAAGGGAGATAGTAAACCACCGATCTTTAAGGCATCCAAATATTATCAGGTTCAAAGAGGTATTTCTAACCCCTACTCATTTAGCTATTGTCCTGGAGTATGCTGCTGGTGGTGAACTCTTCGAGAGGATATGCAATGCTGGTCGATTGAGTGAAGATGAgGCAAGATTTTTCTTCCAGCAACTAATATCTGGAGTTAGCTATTGTCATTCCATGCAAATATGTCATAGAGATCTGAAACTGGAAAACACTCTATTGGATGGAAATCCAGCTCCTCGACTTAAAATTTGTGACTTTGGTTTCTCCAAGTCTGCTTTGCTGCACTCTCAACCCAAATCAACAGTTGGAACTCCTGCATACATTGCTCCAGAAGTGTTGTCACGAAAGGAATATGATGGAAAGATTGCAGATGTTTGGTCGTGTGGTGTGACTCTTTATGTCATGTTGGTTGGAGCATACCCATTTGAAGATCCAGAAGATCCTAAAAATTTCAGAAAGAGTATTGGGAGAATTATGAGTGTTCAATACTCCATACCCGACTACGTACGTGTCTCTAAGGAGTGTAGGCATCTTCTCTCTCGTATTTTTGTTTCCAATCCTGCCAAgAGGATAACCATCTCCGAGATAAAACAGCACCTTTGGTTTAGGAAGAACTTGCCAAGGGAGATAATTGAGGGTGAAAGAAGAGGTTACGAGGAAACACAAAAGGACCAACCAAGCCAAAGTGTGGAAGAAATCATGCGGATCATACAAGAAGCAAGGACAAAAATCGAAACTGGTGAGCAAGCTGGGACAGAATCGTCGGAAGCTGTGCATGGTGATGAGGCTAATGAGGAAGTTGATGTTAATGACGACTATGCCAAATACCTAGGCCTTGATTAA 1020 0.4167 MEERYETLKELGSGNFGVARLAKDKKTGDLVAIKYIERGKKIDANVQREIVNHRSLRHPNIIRFKEVFLTPTHLAIVLEYAAGGELFERICNAGRLSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGFSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKSIGRIMSVQYSIPDYVRVSKECRHLLSRIFVSNPAKRITISEIKQHLWFRKNLPREIIEGERRGYEETQKDQPSQSVEEIMRIIQEARTKIETGEQAGTESSEAVHGDEANEEVDVNDDYAKYLGLD 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2678 339 SUPERFAMILY Protein kinase-like (PK-like) 3 271 IPR011009 -
Ssu2g2678 339 Gene3D Transferase(Phosphotransferase) domain 1 81 269 - -
Ssu2g2678 339 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2678 339 CDD STKc_SnRK2 4 260 - -
Ssu2g2678 339 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2678 339 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2678 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Ssu2g2678 339 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Ssu2g2678 339 MobiDBLite consensus disorder prediction 303 330 - -
Ssu2g2678 339 PANTHER SERINE/THREONINE KINASE 3 332 - -
Ssu2g2678 339 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Ssu2g2678 339 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 3 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2678 Ssu-Chr2 86990169 86993205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2678 4 273 CBL-interacting serine-threonine protein kinases AT4G24400 43.772 1.61e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Ssu2g2678 Pkinase 2.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2678 K14498 - gmx:547790 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2678 2 86990169 86993205 Ssu2g2678 2 86990169 86993205 ECH
Ssu2g2678 2 86990169 86993205 Ssu6g1684 6 28288219 28291700 PCT