Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2672 ATGAACTGTTTCTTCTTCATACACAAACCGAAGGGAAACCAGAAGAAGAATCGGGTGGTGAATGGAGCAACCAAGTCCCCCAGCCCGCTACCATCATCGCCAAGGAGCATAAAAGAATTGTACCAAGAGAAAGGGCACAATTTCAGAATTTTCACTTTGCAAGAGCTCGTAGATGCAACGAATGGTTTCAATAGGATGCTCAAGATTGGAGAAGGGGGTTTTGGGAAAGTATATAGGGGAACAGTTAGACCTGACCCTGAAGACGGAGCAGGTCCAATTGTGGTCgcaataaaaaaacttaacacGCGTGGCTTACaggGGCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCGTTGTTAACCACCCGAATTTGGTTAAGCTTCTGGGATACTGCTCTGTAGACAGTGAAAAAGGAATCCAACGGTTGTTAGTGTATGAGTACATGCCTAACAGGAGCCTAGAAGATCATCTTTTCAGTCTTTCTTTACCTCATTTGCCTTGGAAAACAAGATTGCGGATCATGCTTGGTGCTGCTCAAGGATTACATTATCTACATAAAGGATTGGAGGTTCAGGTGATCTACCGAGATTTCAAATCTTCAAATGTGCTATTGGACACGAAATTCCATCCCAAGCTCTCAGATTTCGGTCTTGCTAGGGAGGGCCCAACAGGTGATCAGACTCATGTATCTACTGCGGTAGTGGGGACGCAAGGATATGCCGCCCCAGAGTATGTTGAAACAGGTCATCTCAAAGTTCAGAGTGACATATGGAGTTTCGGTGTGGTTCTTTACGAGATCCTCACAGGGAGGCGTGTGTTGAATAGAAACCGTCCAATAGGGGAACAAAAGCTTATAGAGTGGGTTAAAAATTACCCTGCTAACAGTAGCAGATTCAGCACGATCATTGACCCACGTCTCAAGAACCAATATTCTCTTGGTGCAGCTCGGAAAATAGCCAAGTTGGCAGATAGCTGCTTGAAGAAGAATCCTGAAGATAGACCATCCATGAGTCAGATAGTGGAAAGCTTGAAGCAGGCATTGCAGGATTCAGAAACCACAAACACTTCGCACAATATGACTTCTAAATCCACTCGATCTAAATTGGTCCCAAGTGGTAAATAG 1128 0.4371 MNCFFFIHKPKGNQKKNRVVNGATKSPSPLPSSPRSIKELYQEKGHNFRIFTLQELVDATNGFNRMLKIGEGGFGKVYRGTVRPDPEDGAGPIVVAIKKLNTRGLQGHKEWLAEVQFLSVVNHPNLVKLLGYCSVDSEKGIQRLLVYEYMPNRSLEDHLFSLSLPHLPWKTRLRIMLGAAQGLHYLHKGLEVQVIYRDFKSSNVLLDTKFHPKLSDFGLAREGPTGDQTHVSTAVVGTQGYAAPEYVETGHLKVQSDIWSFGVVLYEILTGRRVLNRNRPIGEQKLIEWVKNYPANSSRFSTIIDPRLKNQYSLGAARKIAKLADSCLKKNPEDRPSMSQIVESLKQALQDSETTNTSHNMTSKSTRSKLVPSGK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2672 375 PANTHER OS01G0588500 PROTEIN-RELATED 7 353 - -
Ssu2g2672 375 MobiDBLite consensus disorder prediction 15 35 - -
Ssu2g2672 375 ProSiteProfiles Protein kinase domain profile. 63 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2672 375 PANTHER RECEPTOR-LIKE KINASE PLANT 7 353 - -
Ssu2g2672 375 SUPERFAMILY Protein kinase-like (PK-like) 46 345 IPR011009 -
Ssu2g2672 375 Pfam Protein kinase domain 65 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2672 375 MobiDBLite consensus disorder prediction 343 375 - -
Ssu2g2672 375 Gene3D Phosphorylase Kinase; domain 1 35 149 - -
Ssu2g2672 375 CDD STKc_IRAK 69 347 - -
Ssu2g2672 375 ProSitePatterns Protein kinases ATP-binding region signature. 69 99 IPR017441 GO:0005524
Ssu2g2672 375 Gene3D Transferase(Phosphotransferase) domain 1 150 371 - -
Ssu2g2672 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Ssu2g2672 375 MobiDBLite consensus disorder prediction 17 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2672 Ssu-Chr2 86925607 86927847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2672 1 345 Glycoside Hydrolase AT3G07070 42.857 1.38e-95 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu2g2672 Pkinase 9.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2672 - K00924 gmx:100782248 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2672 2 86925607 86927847 Ssu2g2672 2 86925607 86927847 ECH
Ssu2g2672 2 86925607 86927847 Ssu6g1693 6 28484551 28486644 PCT