Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2670 atggGCGAAGAAATGCGACGCAGTGTGCCGGTTCTGCCATGGATGCGCGACCCCGTCGACATCACTCGCTGCCAAGAACTCTCCGTCCGTGGGGTTCCTTTCCTGGACCCAAGGTTAAAGTCGGCACTGACGAACATGGGAATCTCGAAGCTGTTCCCGGTTCAAGTGGCAGTTTGGGTGGAAACAGTTGGACCGGGTAACTTCGAGCGAGACCTCTGCATAAACTCGCCCACCGGAAGCGGCAAAACCTTGGCCTACGCTCTCCCCATCGTGCAAAAGTTGTCCACTCGCACTGTCAGGCTCCTCCGTGCTCTGGTCGTGGTCCCCACCCGCGACCTTGCCTCGCAAGTTAAACAGGTTTTCGACACCCTTGCATTGCCGTTAGGCCTGCACGTTGGCCTGGCTGTTGGCCAATCTTCGGTGGCCGATGAGGTCTCTAGCCTTGTTTACCTGCCGGAAGACGAGGACGATCCAATTTCGCTTCACTTCCGGTTTCAAAGCAAGGTGGACATATTGGTGGCAACCCCCGGAAGGCTCGTGGATCACATCATGAACAAGAAGAAGACACGCTTCTCACTGAATCATCTTTGTTATCTCGTGGTTGATGAAACAGATCGGTTGCTCCGGGAGGACTACCAGTCCTGGCTGCCTACTGTTCTTGAATCGACCCAATCTAACGATGATGTTTTTCAATCGGGTTTCCCTTATTCTCCATTCGATGCGTTGAGAACCATAATAAGATGTGGTGGAGTTGAGAGGGGGTTCAAGCGTTACCCTAGGCTGGCAAAGATGGTTTTATCTGCAACATTAACTCAGGACCCAGGCAAGCTTGTTCAGCTTAATTTACATCACCCTTTATTCCTGAGCGCTGGGAAAATGCGTTATCGGCTCCCAGAAAATTTGGAATCTTACAAACTTatcTGTGAAAGAAAGGTCAAACCTTTGTATTTGGTTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGACTCAGCATGTCGTCTCTGCAAATTGCTGCATTGTTTTGGAGATCTGCAAATTGATGTCAAGGAGTATTCTGGTCGTCAACATCAACGTGTAAGAAGCAAGACACTGAATGAATTTCGGAAAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGGCTCGTGGAATGGATATTGAAGGGGTAAGAAATGTCATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCATCGGGCTGGTAGGACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTCACATTGATGTCAAAAGATGAGGTTGGACGATTTAAGAAGTTGATGAAAAAGGCTGAGGCTATTACTTGTCTTGAGCATACTGTTCCATCCAGTTTGATTGAAGCACTTCATACTACCTACCAATCAGCACTGACCAAAATGGAGATAATTTTGGAGACTCGGAAGAAACCCAAGGATTAG 1470 0.4776 MGEEMRRSVPVLPWMRDPVDITRCQELSVRGVPFLDPRLKSALTNMGISKLFPVQVAVWVETVGPGNFERDLCINSPTGSGKTLAYALPIVQKLSTRTVRLLRALVVVPTRDLASQVKQVFDTLALPLGLHVGLAVGQSSVADEVSSLVYLPEDEDDPISLHFRFQSKVDILVATPGRLVDHIMNKKKTRFSLNHLCYLVVDETDRLLREDYQSWLPTVLESTQSNDDVFQSGFPYSPFDALRTIIRCGGVERGFKRYPRLAKMVLSATLTQDPGKLVQLNLHHPLFLSAGKMRYRLPENLESYKLICERKVKPLYLVALLKSLGEEKCIVFTRSVDSACRLCKLLHCFGDLQIDVKEYSGRQHQRVRSKTLNEFRKGEFQVLVSSDAMARGMDIEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVGRFKKLMKKAEAITCLEHTVPSSLIEALHTTYQSALTKMEIILETRKKPKD 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2670 489 CDD SF2_C_DEAD 301 432 - -
Ssu2g2670 489 Pfam Helicase conserved C-terminal domain 313 424 IPR001650 -
Ssu2g2670 489 CDD DEADc_DDX51 39 289 - -
Ssu2g2670 489 Gene3D - 300 488 IPR027417 -
Ssu2g2670 489 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 33 469 - -
Ssu2g2670 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 445 IPR027417 -
Ssu2g2670 489 Gene3D - 18 299 IPR027417 -
Ssu2g2670 489 PANTHER RNA HELICASE 33 469 - -
Ssu2g2670 489 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 288 IPR014001 -
Ssu2g2670 489 Pfam DEAD/DEAH box helicase 68 276 IPR011545 GO:0003676|GO:0005524
Ssu2g2670 489 SMART helicmild6 343 424 IPR001650 -
Ssu2g2670 489 SMART ultradead3 47 304 IPR014001 -
Ssu2g2670 489 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 316 466 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2670 Ssu-Chr2 86879499 86884210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2670 70 438 Eukaryotic Initiation Factors Gene Family AT3G19760 24.194 9.15e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2670 K14807 - gmx:100789424 658.292