Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2660 ATGGATGTGAGCAGCAGCAACCCTCATTACTTGGCTTTAGTCATTTGGTATCAACAAGGAATGAGAAACATGACTGCTGTGCAGCTCTGTGAGACTCAAAACTTTGTCTGCAACTTACTGGATTGGAGACATGGAACGGTGTGGACTACAATCTCTCTATCGAATGGACCTTTGTCTGTATGGATGGTATTTAGTGATGAAGAAAAGGGAGAAGAAACGTGGGTTGTTCCTGTTAATAACATGGAGAAACATACGATTCGGGTGTACAAGTGA 273 0.4249 MDVSSSNPHYLALVIWYQQGMRNMTAVQLCETQNFVCNLLDWRHGTVWTTISLSNGPLSVWMVFSDEEKGEETWVVPVNNMEKHTIRVYK 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2660 90 PANTHER EXPANSIN-B3 1 83 - -
Ssu2g2660 90 SUPERFAMILY PHL pollen allergen 5 79 IPR036749 -
Ssu2g2660 90 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 1 83 - -
Ssu2g2660 90 Pfam Expansin C-terminal domain 5 77 IPR007117 -
Ssu2g2660 90 Gene3D - 2 85 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2660 Ssu-Chr2 86532406 86532877 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2660 4 79 Expansin Gene Family AT4G38400 31.646 2.32e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2660 - - gmx:100794009 130.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2660 2 86532406 86532877 Ssu6g1704 6 28721783 28723648 PCT