Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2658 ATGGCAGATACTTCATGCACCGACTGTTTCATTCATTCTCGGGCAGCATATTATCCAAATTCTGAAGAACACGGGACAGATGTAGGCGCATGTGGGTTTGGTTCTTTTGGTGCTACAGTCAATGGCGGGGATGTATCAGCTGCATCTTCTCTTTATCGAAATGGTGTTGGTTGTGGGGCCTGTTACCAGGTGAGGTGTACCAACAGTGCCTATTGCTCAGACAACGGTGTCACCGCAGTTATAACTGATCAAGGTTCAAGTGATAACACTGATTTCATTCTTAGCAAACATGCCTTTAGCCGGATGGCTCAAACCACGGATGCAGCTGCTTCTCTATTAGCCCTTGGCGTGGTTGATATTGAATATAGACGTGTTGCATGCAGCTACCCaaacaaaaacataacattCAAGATAGATGATAGCAGCAACAACCCTTATTACTTGGCTTTTGTCATTTGGTATCAACAAGGAAGGAGAGACATAACTGCTGTGCAGCTCTGTGAGACTCAAAACTTTGTCTGCAAGTTACTGGATCGGAGCAATGGAGCGGTGTGGACTACTACCTCTCCACCAAGTGGACCTTTGTCTGTAAGGATGTTGTTTAGTgatgaagaagaggaagaagaaacgTGGGTTGTTCCTGTTAATAACATACCCGGAGACTGGAAGGCTGGAGAAACATACGATTCAGGGGTACAAATGAACCAATAA 711 0.429 MADTSCTDCFIHSRAAYYPNSEEHGTDVGACGFGSFGATVNGGDVSAASSLYRNGVGCGACYQVRCTNSAYCSDNGVTAVITDQGSSDNTDFILSKHAFSRMAQTTDAAASLLALGVVDIEYRRVACSYPNKNITFKIDDSSNNPYYLAFVIWYQQGRRDITAVQLCETQNFVCKLLDRSNGAVWTTTSPPSGPLSVRMLFSDEEEEEETWVVPVNNIPGDWKAGETYDSGVQMNQ 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2658 236 Pfam Lytic transglycolase 48 122 IPR009009 -
Ssu2g2658 236 PANTHER EXPANSIN-B3 4 235 - -
Ssu2g2658 236 Gene3D - 2 128 IPR036908 -
Ssu2g2658 236 SUPERFAMILY PHL pollen allergen 132 230 IPR036749 -
Ssu2g2658 236 Pfam Expansin C-terminal domain 134 213 IPR007117 -
Ssu2g2658 236 SUPERFAMILY Barwin-like endoglucanases 6 131 IPR036908 -
Ssu2g2658 236 PANTHER EXPANSIN-LIKE B1 4 235 - -
Ssu2g2658 236 Gene3D - 129 235 IPR036749 -
Ssu2g2658 236 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 146 230 IPR007117 -
Ssu2g2658 236 PRINTS Expansin/Lol pI family signature 115 131 IPR007118 GO:0005576
Ssu2g2658 236 PRINTS Expansin/Lol pI family signature 27 45 IPR007118 GO:0005576
Ssu2g2658 236 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Ssu2g2658 236 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 28 132 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2658 Ssu-Chr2 86519182 86520903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2658 7 234 Expansin Gene Family AT4G17030 41.921 2.75e-57 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2658 - - gmx:100794009 466.848