Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu2g2658 | ATGGCAGATACTTCATGCACCGACTGTTTCATTCATTCTCGGGCAGCATATTATCCAAATTCTGAAGAACACGGGACAGATGTAGGCGCATGTGGGTTTGGTTCTTTTGGTGCTACAGTCAATGGCGGGGATGTATCAGCTGCATCTTCTCTTTATCGAAATGGTGTTGGTTGTGGGGCCTGTTACCAGGTGAGGTGTACCAACAGTGCCTATTGCTCAGACAACGGTGTCACCGCAGTTATAACTGATCAAGGTTCAAGTGATAACACTGATTTCATTCTTAGCAAACATGCCTTTAGCCGGATGGCTCAAACCACGGATGCAGCTGCTTCTCTATTAGCCCTTGGCGTGGTTGATATTGAATATAGACGTGTTGCATGCAGCTACCCaaacaaaaacataacattCAAGATAGATGATAGCAGCAACAACCCTTATTACTTGGCTTTTGTCATTTGGTATCAACAAGGAAGGAGAGACATAACTGCTGTGCAGCTCTGTGAGACTCAAAACTTTGTCTGCAAGTTACTGGATCGGAGCAATGGAGCGGTGTGGACTACTACCTCTCCACCAAGTGGACCTTTGTCTGTAAGGATGTTGTTTAGTgatgaagaagaggaagaagaaacgTGGGTTGTTCCTGTTAATAACATACCCGGAGACTGGAAGGCTGGAGAAACATACGATTCAGGGGTACAAATGAACCAATAA | 711 | 0.429 | MADTSCTDCFIHSRAAYYPNSEEHGTDVGACGFGSFGATVNGGDVSAASSLYRNGVGCGACYQVRCTNSAYCSDNGVTAVITDQGSSDNTDFILSKHAFSRMAQTTDAAASLLALGVVDIEYRRVACSYPNKNITFKIDDSSNNPYYLAFVIWYQQGRRDITAVQLCETQNFVCKLLDRSNGAVWTTTSPPSGPLSVRMLFSDEEEEEETWVVPVNNIPGDWKAGETYDSGVQMNQ | 236 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu2g2658 | 236 | Pfam | Lytic transglycolase | 48 | 122 | IPR009009 | - | |
Ssu2g2658 | 236 | PANTHER | EXPANSIN-B3 | 4 | 235 | - | - | |
Ssu2g2658 | 236 | Gene3D | - | 2 | 128 | IPR036908 | - | |
Ssu2g2658 | 236 | SUPERFAMILY | PHL pollen allergen | 132 | 230 | IPR036749 | - | |
Ssu2g2658 | 236 | Pfam | Expansin C-terminal domain | 134 | 213 | IPR007117 | - | |
Ssu2g2658 | 236 | SUPERFAMILY | Barwin-like endoglucanases | 6 | 131 | IPR036908 | - | |
Ssu2g2658 | 236 | PANTHER | EXPANSIN-LIKE B1 | 4 | 235 | - | - | |
Ssu2g2658 | 236 | Gene3D | - | 129 | 235 | IPR036749 | - | |
Ssu2g2658 | 236 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 146 | 230 | IPR007117 | - | |
Ssu2g2658 | 236 | PRINTS | Expansin/Lol pI family signature | 115 | 131 | IPR007118 | GO:0005576 | |
Ssu2g2658 | 236 | PRINTS | Expansin/Lol pI family signature | 27 | 45 | IPR007118 | GO:0005576 | |
Ssu2g2658 | 236 | PRINTS | Expansin/Lol pI family signature | 216 | 230 | IPR007118 | GO:0005576 | |
Ssu2g2658 | 236 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 28 | 132 | IPR007112 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu2g2658 | Ssu-Chr2 | 86519182 | 86520903 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu2g2658 | 7 | 234 | Expansin Gene Family | AT4G17030 | 41.921 | 2.75e-57 | 181 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu2g2658 | - | - | gmx:100794009 | 466.848 |