Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2650 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTCCCAAAGGGACTTAGGGTTCTTCTGCTTGAAGGAGATAGTAGTTCTGCTGCTGAGATAAGAGAACAGCTGGAGGCCATGGACTATAATGTTTCTACGTTCTACAATGAGAATGAAGCCTTGTCAGCAATTTCGAGTAGTCCTGAAGGCTTCCATGTTGCCATAGTGGAGGTGAGTACAAGCAGTAGCCTTGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCTACCATTATGACTTCAAAGAACCAGTGCCTGAACACCATGATGAAGTGCATTTCGCTTGGTGCAGTTGAGTTCCTCAGTAAACCACTCTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGTTCACAAGGCATTTAATGCTGGGGCAAATGTCCTGTCTGAATCACTAAAACCTGTCAAAGAATCTGTAGAATCAATGCTGCAGCTCCAAACAGACAACGATAATGACCATGAGCAATCTGCTGTATGTGATAAATATCCGGCTCCTTCAACCCCACAATTAAAACAGGGGACAAGGTTACTGGATGATGGAGATTGCCATGAGCAGACTAATTGCtcaacagaaaaagaaagtggGGAACATGATGGGGAATGTAAATTTGTCGAAACTTCATGTGACAATTTGAATGCTGAAAGTTATCCTCAACCAAGGGAACCTGAGAAGACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCAAAGGGTGAGAGTGCTGTTTCACTGAATCCACATAATAAAAAGTTTCTCAGCAATGCTGATGGTAATACATCTCTGAATAAAACGGGTGTACTTAATGATTCATGTGAGATTAAAGCTAATCGGAGGAAGATGAAAGTAGACTGGACGCCTGAGCtgcataaaaaatttgtaaaggcTGTCGAACAACTAGGTATTGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGTTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATACACAAGAGACAAAGTGCACCCGGGGAAGAAGATCGAAAATGGCATAATCAAAGAGATATAATGCAAGGGAGCTATTATTTGCAAAGACCAATAATGGCCTACCCTCCATATCATTCTAATCACACCCTTTCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGCAGTCAAACAGCTGGCGTACAGATTTGGGGTCCTCCTGGTTATCCCTTGTGGCATCCTACAGAAAGTTGGCACTGGAAGCCTTATCCGGGGGTGCATGTGGATGCTTGGGGATGCCCGATGTTGCCACCTCCTCCAGCTCCTTATTTTTCCTACAATCAAAATATCCCTGAATTGCACAGTCCTAAAGCAGTGGATTATAGATTCAGCATGCCACAAAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTTGTGAAGGAAGCAATGAGCAAGCCATGGCTACCACTACCCTTAGGACTGAAACCTCCTTCCATGGATAGTGTTTTGGCTGAGCTCTCCAAACAAGGCATATCCAGCATCCCTCTTGGCAACAAGGGTTCTTCTACTTCTAAACCCTGCTGA 1623 0.427 MVCTANDLQGWKDFPKGLRVLLLEGDSSSAAEIREQLEAMDYNVSTFYNENEALSAISSSPEGFHVAIVEVSTSSSLGGFKFLENAKDLPTIMTSKNQCLNTMMKCISLGAVEFLSKPLSEDKLKNIWQHVVHKAFNAGANVLSESLKPVKESVESMLQLQTDNDNDHEQSAVCDKYPAPSTPQLKQGTRLLDDGDCHEQTNCSTEKESGEHDGECKFVETSCDNLNAESYPQPREPEKTLIKEEEDFANGSKGESAVSLNPHNKKFLSNADGNTSLNKTGVLNDSCEIKANRRKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIHKRQSAPGEEDRKWHNQRDIMQGSYYLQRPIMAYPPYHSNHTLSPAPIYPMWGQPGSQTAGVQIWGPPGYPLWHPTESWHWKPYPGVHVDAWGCPMLPPPPAPYFSYNQNIPELHSPKAVDYRFSMPQSSFEHHPAEEVVDKVVKEAMSKPWLPLPLGLKPPSMDSVLAELSKQGISSIPLGNKGSSTSKPC 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2650 540 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Ssu2g2650 540 Pfam Myb-like DNA-binding domain 298 347 IPR001005 -
Ssu2g2650 540 Gene3D - 18 142 - -
Ssu2g2650 540 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Ssu2g2650 540 SUPERFAMILY CheY-like 16 134 IPR011006 -
Ssu2g2650 540 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 295 350 IPR006447 GO:0003677
Ssu2g2650 540 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 536 - -
Ssu2g2650 540 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 292 351 IPR017930 -
Ssu2g2650 540 SMART REC_2 18 128 IPR001789 GO:0000160
Ssu2g2650 540 MobiDBLite consensus disorder prediction 163 195 - -
Ssu2g2650 540 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 536 IPR044825 GO:0003700|GO:0045893
Ssu2g2650 540 SUPERFAMILY Homeodomain-like 294 351 IPR009057 -
Ssu2g2650 540 Gene3D - 291 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2650 Ssu-Chr2 86431613 86436697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2650 1 528 Response Regulator Gene Family AT4G18020 51.180 1.48e-144 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ssu2g2650 Response_reg 6e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2650 - - gmx:100784905 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2650 2 86431613 86436697 Ssu6g1715 6 28867746 28869858 PCT