Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2634 ATGTTGGACAACAGAAGAGAATGGGCCCAAATATTATCCGGACGACGGCCCACAAAAGAAAGCTATAAATTGATCAAACCCCAAATCAAAACAAACCTTGCGGTGGCTACTAAGTTCCCTGGACTGAACAGGTACACACTGAATTCGTCACTCACGTATCTGTTGCTCTCTGCTCCCTTCCACCGAACATATCCTCTGAATAATAACATGCGTTGCACTGTGAAGAATAAGAACAATCGAGCGAATCGGAAAGCTCGTTCGGTGAAACCCAATTATGATTCATCTTCTATTTTGAACAAGAAATGGATGGTTCCCTATAAATACCATGATGATTCAGGTCCCAATTCCGACTCAAACCCTAATGTTGACTCATCCAGTTGGGTTTTCTGCACTGAGGACCAATTGGAAGACATTGTGTTGAAAAACATTGAAATTATATACAACGACATTGTGTCAAGGCTTGTTGCTTTGGGGCACAATGAGGATGTTGCCGTCCAAGCGATTCTGCATAATGGACATTGTTATGGTGCCATGGATATGGCAGCAAACCTAATGCACAACACCTTGGCCTGTTTGAAAAAGGAGAACTTGAACAAGTATGAGTTCAAGCCTGCGTTCTCTGACTTGAAGAAGCTTGGAGAGTACTCTCTGACATGTCTTGTGTCTTTGCTGCAAGAAGTGAGGCGCGATTTAAGTAGAGGTGATGCTATGTGGTGTCTCCTCATGAGCAATTTCCATGTGGTAAAGGCAAGCGCCATCCAAATTCCTGTTGGCAACCAGTGTCCTTCTTTAACTGAACTTGAGAATGAGGGATGGGGATTTGGAAACGAGGGAGGCTCGGGTTTTCCTGTGAACGGGTTATTTTATGGTACCAAGATGACTATACGGTTGCGGAGAGATATTGAATTTCCAAAAAGACTTGATCTTACTCCTGCCATGAAGTCCTTGCTGAAAAGAAATGTTTCAATGTTTGCTGCTGGTTATAGGTCTAACTTGAAACAGTTGAATTCCCAAAAAGATTTGATCTTTCCTGGCAATAGCACCGTTTCAAAATTGGATTCTTCATCTGTTTCTGGGACTGCAGTGCTTGGGGAGCAGCCTGGTGACTCTCATGATCTGAATGACCAAGATGACTTGAACTCTGTGCTGAGTAAATTGCTTGATCTAAATATTGATGAGAATTTGGATTTTGTGGCAGAAGATGAGAAGGCAGAAGATGAGAAGGATGAGGTGATTGTCACTCTAGTTCAACAGATAAAGGATCTTGAGAAACAGGTCAAGGAGCGGAAAGATTGGGCTCAGGAGAAGGCAATCCAAGCGGCAAGAAAGCTAAGCAGTGATCTGATCGAGCTGAGAATGTTCAAGATGGAAAGAGAGGAGAATCAAAAACTGAAGTATGGGAAAGATGAGGCACTTGAGGACCCAACCATGATGAGACTCTCAGAAATGGAGAATGCCTTGAGAAAGGTTAGTGGTCAAGTGGACCAAGCAAATGCAGCTGTCAGAAAACTTGAGGCGGAGAAAGCTGAAATCAAAGCAGAGTTAGAGGCATCTAAATTAAGTGCATCAGAGTCGGTCGCAAACTGCTTGCAAGTTgcaaaaagggagaaaaagtgCTTAAAGAAGCTTCTGGCTTGCGAAAAACAGAGAGCTAAGATAGAACGGGATATTTCAGATGAAAAACAGAAGATATTGGAGATACAAGAAGAATTGGCTCAGATTAAACAGCGTGCAATAGAAGCTGAGGTCATGAGGAAGGAAGAGGTGAAGGCTAAGGAGGAAGCCTTAGCACTAATTGAAGAGGAACAACGTTCTAAGGAAGCAGCTGAggctaataaaaaaagaaatattaaggcTTTACGCCTGAAGATAGAGATAGATTTCCAGCGTCGTAAGGATGATCTCTTAAGGCTTGAGCAGGAGATTTCGAGTCTTAAAGCATCTGCACGGTCTACCACTTTGCCTACAAGTGAGTCTGAGGATGCAGAGCCCCAGAGGGAGACAATTGCTAAGCTTCTGCAAGGCTTAGATAACGTGAAGGATTTTTCAGGACAAGAAGTCAACGGTAATAGAGAATGCCTTATATGTGGAAAAGATGAAGTTTCCGTAATTTTCTTGCCATGTGCACACCAAGTTATGTGTGCTAGCTGCGGTAAAGAGTATGGAAGAAAGGGCAACGCTGTTTGTCCATGCTGCCGGGTTCCAATTAAACAGAGAATCCGTATATTTGGGGCAAGTTCGTAG 2244 0.4242 MLDNRREWAQILSGRRPTKESYKLIKPQIKTNLAVATKFPGLNRYTLNSSLTYLLLSAPFHRTYPLNNNMRCTVKNKNNRANRKARSVKPNYDSSSILNKKWMVPYKYHDDSGPNSDSNPNVDSSSWVFCTEDQLEDIVLKNIEIIYNDIVSRLVALGHNEDVAVQAILHNGHCYGAMDMAANLMHNTLACLKKENLNKYEFKPAFSDLKKLGEYSLTCLVSLLQEVRRDLSRGDAMWCLLMSNFHVVKASAIQIPVGNQCPSLTELENEGWGFGNEGGSGFPVNGLFYGTKMTIRLRRDIEFPKRLDLTPAMKSLLKRNVSMFAAGYRSNLKQLNSQKDLIFPGNSTVSKLDSSSVSGTAVLGEQPGDSHDLNDQDDLNSVLSKLLDLNIDENLDFVAEDEKAEDEKDEVIVTLVQQIKDLEKQVKERKDWAQEKAIQAARKLSSDLIELRMFKMEREENQKLKYGKDEALEDPTMMRLSEMENALRKVSGQVDQANAAVRKLEAEKAEIKAELEASKLSASESVANCLQVAKREKKCLKKLLACEKQRAKIERDISDEKQKILEIQEELAQIKQRAIEAEVMRKEEVKAKEEALALIEEEQRSKEAAEANKKRNIKALRLKIEIDFQRRKDDLLRLEQEISSLKASARSTTLPTSESEDAEPQRETIAKLLQGLDNVKDFSGQEVNGNRECLICGKDEVSVIFLPCAHQVMCASCGKEYGRKGNAVCPCCRVPIKQRIRIFGASS 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2634 747 ProSiteProfiles Zinc finger RING-type profile. 693 733 IPR001841 -
Ssu2g2634 747 Coils Coil 480 521 - -
Ssu2g2634 747 Pfam Zinc finger, C3HC4 type (RING finger) 690 738 - -
Ssu2g2634 747 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 680 744 IPR013083 -
Ssu2g2634 747 SUPERFAMILY RING/U-box 692 739 - -
Ssu2g2634 747 Pfam Family of unknown function (DUF6592) 142 251 IPR046527 -
Ssu2g2634 747 Coils Coil 530 584 - -
Ssu2g2634 747 Coils Coil 592 619 - -
Ssu2g2634 747 PANTHER OS05G0141500 PROTEIN 70 746 IPR046934 -
Ssu2g2634 747 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 70 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2634 Ssu-Chr2 86226109 86229475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2634 666 742 C3H Transcription Factor Family AT3G06140 36.364 2.01e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2634 - - gmx:100789166 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2634 2 86226109 86229475 Ssu6g1730 6 29175270 29181051 PCT