Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2633 atgCCAGTTCCACTTGCCCCCTATCCGACACCCCCTCCACCAGCTCCATATACGCCTCCACCAAATGGTGCGCAGAGTCAACTTGTCTGCTCTGGGTGCAGAAACCTTCTGCTCTATCCAGTTGGAGCCACCTCTGTATGCTGCGCTATTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGCTGTCACACTTTCCTCATGTACATCCGTGGAGCTACAAGTGTGCAATGCTCTTGTTGTCACACGGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAGCTGTGGGAACTGTAAGATGCTACTCATGTACCAATATGGAGCAAGATCCGTGAAATGTGCGGTTTGCAGTTTTGTAACATCAGTTGGGGTAATCCGTAGTAggcttgtttttttttcttcccaaaGCACGCAAAGTGGCACTGCATCCTCCCTCAGTCACCCTTCACTCTTGTGTGCTTCAATGGAAATTCTTGAACTAGTTTTGGTATTCTTGACGTTGTCCCTAGTTGGATCGATAACATCCAcccctctttttcttcttcgaAAACTGAGTCTGACACTCTATGTCGAACAACTCGCTCTTCCTGTTTCCGTTCCCGCGGAAGCCATGCGAGTGACGCTCACGACTCTGCCGGCGATCCATTCCCCCACTCGCCTCCACACCTCACGTGGAACTTGCTACAGTGCAGAGGCTTATGGTATATTCTCCGCCGTCCCGAGACACTTCATCAGCTTTGCTTTTGTTTATTTGTAA 792 0.4735 MPVPLAPYPTPPPPAPYTPPPNGAQSQLVCSGCRNLLLYPVGATSVCCAICNAVTAVPPPGTEMAQLVCGGCHTFLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCKMLLMYQYGARSVKCAVCSFVTSVGVIRSRLVFFSSQSTQSGTASSLSHPSLLCASMEILELVLVFLTLSLVGSITSTPLFLLRKLSLTLYVEQLALPVSVPAEAMRVTLTTLPAIHSPTRLHTSRGTCYSAEAYGIFSAVPRHFISFAFVYL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2633 263 PANTHER PROTEIN LSD1 1 139 IPR040319 -
Ssu2g2633 263 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Ssu2g2633 263 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Ssu2g2633 263 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 104 133 IPR005735 -
Ssu2g2633 263 MobiDBLite consensus disorder prediction 1 20 - -
Ssu2g2633 263 PANTHER PROTEIN LOL1 1 139 - -
Ssu2g2633 263 Pfam LSD1 zinc finger 69 93 IPR005735 -
Ssu2g2633 263 Pfam LSD1 zinc finger 30 54 IPR005735 -
Ssu2g2633 263 Pfam LSD1 zinc finger 107 131 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2633 Ssu-Chr2 86183658 86189642 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Ssu2g2633 zf-LSD1 9.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2633 - - gmx:100788563 253.447