Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2629 ATGGCTGGTTTGGATTTAGGCACGGCTTCACGCTTCGTTCAAAGTCTCCACAGACCAGACTTCAACCATCAGCAACACGAATCCGAGGAAGGGGCGAAGCAATCGGAATCGTTTCCCGCCGAAGACGGACCCCACCGCGACTTGGTGGGGCGTCGGCCGCGCGGCCGTCCGCCGGGGTCGAAGAACAAGTCGAAGCCGCCGGTGATCATAACGCGGGAGAGCCCGAACACCCTCCGCGCGCACATCCTCGAAGTGGGCACGGGCTGCAACGTGTTCGACAGCGTGGCGACCTACGCACGGCGGCGCCAGCGCGGGATCTGTATCCTGAGCGGCAGCGGCACCGTGACGAACGTGAGCCTGCGGCAGCCGGCGTCGGCGGGGGCGGTGGTGACACTCCACGGAAGGTTCGAGATACTGTCGCTGGCGGGATCTTTTCTCCCCCCGCCGGCGCCGCCGGGGGCGACGAGCCTGAGCATATACCTGGCCGGCGGGCAGGGGCAGGTGGTGGGTGGGAGTGTGGTGGGGGAGTTGACCGCTGTGGGCCCCGTGATTGTGATCGTGGCGTCGTTCACCAACGTGGCTTACGAGCGGTTGCCTttggaagaaggagaagaacaGGTTCAGATACAAACACCTGGTGGCGggaacgataataataataataataacaacgcCTTTCCTGACCCTTCCTCGGGACTTCCTTTCTTCAATTTGCCCATGAATGTTCAGTTGCCTTTGGATGGGTGGGCGGGAAACTCAGCTACGCGTTCACCATTTTGA 780 0.5923 MAGLDLGTASRFVQSLHRPDFNHQQHESEEGAKQSESFPAEDGPHRDLVGRRPRGRPPGSKNKSKPPVIITRESPNTLRAHILEVGTGCNVFDSVATYARRRQRGICILSGSGTVTNVSLRQPASAGAVVTLHGRFEILSLAGSFLPPPAPPGATSLSIYLAGGQGQVVGGSVVGELTAVGPVIVIVASFTNVAYERLPLEEGEEQVQIQTPGGGNDNNNNNNNAFPDPSSGLPFFNLPMNVQLPLDGWAGNSATRSPF 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2629 259 Gene3D - 78 212 - -
Ssu2g2629 259 MobiDBLite consensus disorder prediction 209 230 - -
Ssu2g2629 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 23 259 IPR014476 GO:0003680
Ssu2g2629 259 CDD DUF296 79 162 IPR005175 -
Ssu2g2629 259 MobiDBLite consensus disorder prediction 204 230 - -
Ssu2g2629 259 MobiDBLite consensus disorder prediction 20 54 - -
Ssu2g2629 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 23 259 - -
Ssu2g2629 259 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 206 - -
Ssu2g2629 259 MobiDBLite consensus disorder prediction 15 73 - -
Ssu2g2629 259 Pfam Plants and Prokaryotes Conserved (PCC) domain 79 192 IPR005175 -
Ssu2g2629 259 ProSiteProfiles PPC domain profile profile. 75 210 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2629 Ssu-Chr2 86130859 86131638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2629 1 259 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 55.137 1.72e-90 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2629 - - gmx:100810911 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2629 2 86130859 86131638 Ssu6g1738 6 29318384 29319229 PCT