Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2628 ATGGCTGCAGAGATTGGCCTTGTGTCCATGACCCAGATCCAAAAACTATCAGAACCCCAACACCACAAAAACCAACCTCAACCAAACCCTAACTCCAGCTCCACCGCCTCATCGACTTGGATGTGGAACCCTAGGGAGCAGCAGCAGGAAGATGACGATGACTCGTGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATAATGGGCACCACATGGCCTCCCAGGTCCTATACCTGCACCTTCTGCAGAAGGGAGTTCCGCTCGGCCCAAGCCCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGTGCCCGCCTCCACCAGGCTCGGCCCTCCAACCCCACCTCTTCTCTTCCCACTTCACCCTTCATAAATATCCCACCTCAAGAGCTTGTTGCAAATGCCGGATTGTGCCTCCTCTACCACTTGCCAACAAGCCCTAGTGCACCCTTTCCAAACCCCACTACCAATGGGGCTTCTCCCTCCACTCTTCTCTCAATCTCATCATCCTATCCTCAAAACAACTTTGTGATGCAAACTTCCTTTAATTTTCCCCGTGCAGCCGCAACTGGGATCAATACTGTTTCTTCTTTGTGCTGTAACTCAAACAAAGTGGAACAACCCGCCACTTCCtctattgataataataataataataatggccACCTCGAAGAGCTTGATCTAGAGCTCCGCCTCGGGCACAAGCCAACACCAACCTCATAA 726 0.511 MAAEIGLVSMTQIQKLSEPQHHKNQPQPNPNSSSTASSTWMWNPREQQQEDDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQARPSNPTSSLPTSPFINIPPQELVANAGLCLLYHLPTSPSAPFPNPTTNGASPSTLLSISSSYPQNNFVMQTSFNFPRAAATGINTVSSLCCNSNKVEQPATSSIDNNNNNNGHLEELDLELRLGHKPTPTS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2628 241 Gene3D Classic Zinc Finger 69 120 - -
Ssu2g2628 241 Pfam C2H2-type zinc finger 78 102 - -
Ssu2g2628 241 SMART c2h2final6 78 100 IPR013087 -
Ssu2g2628 241 SUPERFAMILY beta-beta-alpha zinc fingers 75 105 IPR036236 -
Ssu2g2628 241 MobiDBLite consensus disorder prediction 207 224 - -
Ssu2g2628 241 MobiDBLite consensus disorder prediction 207 241 - -
Ssu2g2628 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Ssu2g2628 241 MobiDBLite consensus disorder prediction 10 45 - -
Ssu2g2628 241 MobiDBLite consensus disorder prediction 1 55 - -
Ssu2g2628 241 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Ssu2g2628 241 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 41 234 - -
Ssu2g2628 241 PANTHER OS07G0101800 PROTEIN 41 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2628 Ssu-Chr2 86069053 86069778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2628 37 237 C2H2 Transcription Factor Family AT4G17810 40.000 2.83e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu2g2628 zf-C2H2_6 5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2628 - - gmx:100818142 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2628 2 86069053 86069778 Ssu2g2628 2 86069053 86069778 ECH
Ssu2g2628 2 86069053 86069778 Ssu6g1740 6 29402735 29403502 PCT