Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2624 ATGGACGCATCAGCAAGCAGCTGGCTATCTGATTTTGTAACAAATCGTTTGTCATTATTCCTATCTTTAATGCACAAAGGAACCGAATTTCAGTGGATGATCtaccatttttattattacttattttattttattttatttcagctGTTGCAGGAAACGGAGGATTGCAGCTTGTTCCGACAATGCCACCTGAACTTGCTTGACGATGATGAAGAGTTACTTTCGCATGAGATAGCAAGTGCCCTAAACGGTGAGAACTTGCAGCAACCTTTGTCTTCGGAGAGCTCATCCAGTTTTGAGAGGCCCACCAAGCAGCCCAAAACGAATACCTGTAGTTGGAATTCATCCACCTCCCCTTCTTCTCCAATCGATAACTCAAACTCGTCCCCTGCCAACAATACCCAGTTTTACGGGCTTGTTTCTACCTTATGCCCAAAACAGAACAAGGGTGTTTCAGTTTCACCCCCACAAACCCGAAAAGGATCATCACAGAACCAAAACTTTGAAACTGAAAGCCCCAAAGACCGAGGAAGCACTCACACTCGGGATCACATCATCGCCGAGAGGAAACGAAGAGAGAAGCTCAGCCAGAGCTTAATTGCTCTAGCAGCTCTTATTCCGGGCTTAAAAAAGATGGACAAGGCTTCAGTGCTAGGAGACGCAATCAAGTACGTGAAAGAGCTCCAAGAGCGTTTGAGAATGCTTGAAGAACAGAACAAGAATAGAGATGTTGAGTCTATGGTGATCGTCAACAAACCACAGCTCAGCTGCGACGATCATTCACCTTCACGTGATGATGATGGCTTTGACGATGGCAGTGGTAGGGAAACCCTCCCCCGCGTGGAAGCAACAGTGTCAGACATGGACGTGCTCCTTCGCATCCACTGCCAAAAGCAAAAGGGGCTTTTACTCAAAATACTTGTCGAGATTCAAAACCTTCATCTCTTTGTTGTTAATAGCAGTGTCCTACCTTTTGGGGATTCTATACTTGCTATAACCATTGTTGCTCagATGGGCACAGGGTACAACTTGACCATAAATGATCTTGTGAAAAACGTACGCGTGGCGACATTGAAATCGATGTCATAA 1089 0.4399 MDASASSWLSDFVTNRLSLFLSLMHKGTEFQWMIYHFYYYLFYFILFQLLQETEDCSLFRQCHLNLLDDDEELLSHEIASALNGENLQQPLSSESSSSFERPTKQPKTNTCSWNSSTSPSSPIDNSNSSPANNTQFYGLVSTLCPKQNKGVSVSPPQTRKGSSQNQNFETESPKDRGSTHTRDHIIAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKELQERLRMLEEQNKNRDVESMVIVNKPQLSCDDHSPSRDDDGFDDGSGRETLPRVEATVSDMDVLLRIHCQKQKGLLLKILVEIQNLHLFVVNSSVLPFGDSILAITIVAQMGTGYNLTINDLVKNVRVATLKSMS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2624 362 MobiDBLite consensus disorder prediction 147 172 - -
Ssu2g2624 362 MobiDBLite consensus disorder prediction 147 182 - -
Ssu2g2624 362 CDD bHLH_AtNAI1_like 180 252 - -
Ssu2g2624 362 MobiDBLite consensus disorder prediction 85 131 - -
Ssu2g2624 362 MobiDBLite consensus disorder prediction 253 276 - -
Ssu2g2624 362 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 52 362 - -
Ssu2g2624 362 Coils Coil 218 245 - -
Ssu2g2624 362 PANTHER BHLH TRANSCRIPTION FACTOR 52 362 - -
Ssu2g2624 362 MobiDBLite consensus disorder prediction 258 276 - -
Ssu2g2624 362 SMART finulus 185 234 IPR011598 GO:0046983
Ssu2g2624 362 Gene3D - 169 243 IPR036638 GO:0046983
Ssu2g2624 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Ssu2g2624 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 241 IPR036638 GO:0046983
Ssu2g2624 362 Pfam Helix-loop-helix DNA-binding domain 184 229 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2624 Ssu-Chr2 85944031 85945826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2624 159 356 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 51.741 4.13e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g2624 HLH 3.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2624 - - gmx:100816551 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2624 2 85944031 85945826 Ssu6g1742 6 29508549 29538032 PCT