Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2623 ATGACAACAGCGGAAGAATCATGGACAAGTTGGTTGTGCGATTTGCAACCAGAGGATTACAACAATTTCGTCAATCAATCCGACTCAAATGGGGTTGATGGAAGTTTCCCAGCTCGTGATGATACAGTCCCTCCGCCACAAGAGAACTTGCAAGGATCTTTCTCTAGGAACGGCGAAGACTCTTCTTCCATTTTCCAAACGGAACACTCTAGCACCATGAGCAATTCCTCAGGAGATGATAAAATCTTTGGTGAGAGTCCAGCCAAGACACTCAACACTGGCACTTCAAACTCTGCTAACATCTCGTACCTCTCACAAATGGAGGATTCTTCTCTCTCCTACATTCTTGCCTTTGACAATGTGAATCCAGCACCAATACTGTACAATGACTCAACCTTGAAGCCAAAAGCCAAGGTTGCGTGTCACGGGAGAAAGGGGCCCTTGGAAAATCAAAAGAAGGAACCTAGACACAATATTCAGGAGAACAACAACTCTGGCTCTGCGTCCAGATCTCCACACCACGCTAAAGATCACATAATTACtgagagaaagaggagagaaaagatTAGCCAGCAGTTCATAGCTCTTTCAGCCCTTATTCCAGGCCTGAAAAAgATGGACAAGGCCTCGGTGCTTGGGGACGCAATAAAACACGTGAAACAGCTCCAAGAGCAAGTGAAGCTACAGGAAGAGCAGAACAAAAGGAAGAGGGTAGAATCCGTGGTATATGTTGAGAAATCTAAGTTCTCTTCAGATGAAGATGTCTCAGACACCTCGTCAAATTCTGGTGACGGAAACTCCTATGACCCCTCAAAAACAAATGTTTCACTTCCCGAAGTTGAGGCAAGGGTGTTAGAGAAGCACGTGCTGATTCGAATCCACTGCAAGAAACAAAAGGGACTGTTCATGAACGCACTCAAAGTGGTAGAGAATCTTCACCTATCCGTGATCAATAGCAGTATGTTGCTTTTCGGGACATCCAAATTGGACATAACCATCGTAGCAGAGATGGATGATGAGTTCAGCCTGAGCGTGAAGGAGCTGGCTAGAAACCTTCGAGTGGGACTCGTGCAATTTATGTAG 1083 0.4451 MTTAEESWTSWLCDLQPEDYNNFVNQSDSNGVDGSFPARDDTVPPPQENLQGSFSRNGEDSSSIFQTEHSSTMSNSSGDDKIFGESPAKTLNTGTSNSANISYLSQMEDSSLSYILAFDNVNPAPILYNDSTLKPKAKVACHGRKGPLENQKKEPRHNIQENNNSGSASRSPHHAKDHIITERKRREKISQQFIALSALIPGLKKMDKASVLGDAIKHVKQLQEQVKLQEEQNKRKRVESVVYVEKSKFSSDEDVSDTSSNSGDGNSYDPSKTNVSLPEVEARVLEKHVLIRIHCKKQKGLFMNALKVVENLHLSVINSSMLLFGTSKLDITIVAEMDDEFSLSVKELARNLRVGLVQFM 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2623 360 MobiDBLite consensus disorder prediction 22 96 - -
Ssu2g2623 360 MobiDBLite consensus disorder prediction 145 159 - -
Ssu2g2623 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Ssu2g2623 360 PANTHER BHLH TRANSCRIPTION FACTOR 3 357 - -
Ssu2g2623 360 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 3 357 - -
Ssu2g2623 360 CDD bHLH_AtNAI1_like 173 247 - -
Ssu2g2623 360 MobiDBLite consensus disorder prediction 145 177 - -
Ssu2g2623 360 MobiDBLite consensus disorder prediction 46 81 - -
Ssu2g2623 360 MobiDBLite consensus disorder prediction 252 274 - -
Ssu2g2623 360 Pfam Helix-loop-helix DNA-binding domain 178 223 IPR011598 GO:0046983
Ssu2g2623 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 240 IPR036638 GO:0046983
Ssu2g2623 360 MobiDBLite consensus disorder prediction 254 274 - -
Ssu2g2623 360 Gene3D - 172 243 IPR036638 GO:0046983
Ssu2g2623 360 SMART finulus 179 228 IPR011598 GO:0046983
Ssu2g2623 360 Coils Coil 212 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2623 Ssu-Chr2 85922942 85924402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2623 58 360 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.048 4.69e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g2623 HLH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2623 - - gmx:100816024 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2623 2 85922942 85924402 Ssu6g1743 6 29567668 29570325 PCT