Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu2g2623 | ATGACAACAGCGGAAGAATCATGGACAAGTTGGTTGTGCGATTTGCAACCAGAGGATTACAACAATTTCGTCAATCAATCCGACTCAAATGGGGTTGATGGAAGTTTCCCAGCTCGTGATGATACAGTCCCTCCGCCACAAGAGAACTTGCAAGGATCTTTCTCTAGGAACGGCGAAGACTCTTCTTCCATTTTCCAAACGGAACACTCTAGCACCATGAGCAATTCCTCAGGAGATGATAAAATCTTTGGTGAGAGTCCAGCCAAGACACTCAACACTGGCACTTCAAACTCTGCTAACATCTCGTACCTCTCACAAATGGAGGATTCTTCTCTCTCCTACATTCTTGCCTTTGACAATGTGAATCCAGCACCAATACTGTACAATGACTCAACCTTGAAGCCAAAAGCCAAGGTTGCGTGTCACGGGAGAAAGGGGCCCTTGGAAAATCAAAAGAAGGAACCTAGACACAATATTCAGGAGAACAACAACTCTGGCTCTGCGTCCAGATCTCCACACCACGCTAAAGATCACATAATTACtgagagaaagaggagagaaaagatTAGCCAGCAGTTCATAGCTCTTTCAGCCCTTATTCCAGGCCTGAAAAAgATGGACAAGGCCTCGGTGCTTGGGGACGCAATAAAACACGTGAAACAGCTCCAAGAGCAAGTGAAGCTACAGGAAGAGCAGAACAAAAGGAAGAGGGTAGAATCCGTGGTATATGTTGAGAAATCTAAGTTCTCTTCAGATGAAGATGTCTCAGACACCTCGTCAAATTCTGGTGACGGAAACTCCTATGACCCCTCAAAAACAAATGTTTCACTTCCCGAAGTTGAGGCAAGGGTGTTAGAGAAGCACGTGCTGATTCGAATCCACTGCAAGAAACAAAAGGGACTGTTCATGAACGCACTCAAAGTGGTAGAGAATCTTCACCTATCCGTGATCAATAGCAGTATGTTGCTTTTCGGGACATCCAAATTGGACATAACCATCGTAGCAGAGATGGATGATGAGTTCAGCCTGAGCGTGAAGGAGCTGGCTAGAAACCTTCGAGTGGGACTCGTGCAATTTATGTAG | 1083 | 0.4451 | MTTAEESWTSWLCDLQPEDYNNFVNQSDSNGVDGSFPARDDTVPPPQENLQGSFSRNGEDSSSIFQTEHSSTMSNSSGDDKIFGESPAKTLNTGTSNSANISYLSQMEDSSLSYILAFDNVNPAPILYNDSTLKPKAKVACHGRKGPLENQKKEPRHNIQENNNSGSASRSPHHAKDHIITERKRREKISQQFIALSALIPGLKKMDKASVLGDAIKHVKQLQEQVKLQEEQNKRKRVESVVYVEKSKFSSDEDVSDTSSNSGDGNSYDPSKTNVSLPEVEARVLEKHVLIRIHCKKQKGLFMNALKVVENLHLSVINSSMLLFGTSKLDITIVAEMDDEFSLSVKELARNLRVGLVQFM | 360 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu2g2623 | 360 | MobiDBLite | consensus disorder prediction | 22 | 96 | - | - | |
Ssu2g2623 | 360 | MobiDBLite | consensus disorder prediction | 145 | 159 | - | - | |
Ssu2g2623 | 360 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 173 | 222 | IPR011598 | GO:0046983 | |
Ssu2g2623 | 360 | PANTHER | BHLH TRANSCRIPTION FACTOR | 3 | 357 | - | - | |
Ssu2g2623 | 360 | PANTHER | BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN | 3 | 357 | - | - | |
Ssu2g2623 | 360 | CDD | bHLH_AtNAI1_like | 173 | 247 | - | - | |
Ssu2g2623 | 360 | MobiDBLite | consensus disorder prediction | 145 | 177 | - | - | |
Ssu2g2623 | 360 | MobiDBLite | consensus disorder prediction | 46 | 81 | - | - | |
Ssu2g2623 | 360 | MobiDBLite | consensus disorder prediction | 252 | 274 | - | - | |
Ssu2g2623 | 360 | Pfam | Helix-loop-helix DNA-binding domain | 178 | 223 | IPR011598 | GO:0046983 | |
Ssu2g2623 | 360 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 178 | 240 | IPR036638 | GO:0046983 | |
Ssu2g2623 | 360 | MobiDBLite | consensus disorder prediction | 254 | 274 | - | - | |
Ssu2g2623 | 360 | Gene3D | - | 172 | 243 | IPR036638 | GO:0046983 | |
Ssu2g2623 | 360 | SMART | finulus | 179 | 228 | IPR011598 | GO:0046983 | |
Ssu2g2623 | 360 | Coils | Coil | 212 | 239 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu2g2623 | Ssu-Chr2 | 85922942 | 85924402 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu2g2623 | 58 | 360 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G37850 | 39.048 | 4.69e-56 | 184 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Ssu2g2623 | HLH | 3.3e-09 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu2g2623 | - | - | gmx:100816024 | 466.463 |