Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2622 ATGACGGAAATTGCATCCACCAACTACTTGCCTGAACTTGAATTGGAGTATCCAACCTTCTTTGATCAATATTACCCGATGGATTCTTTTGCATCTCCACTTGATGACTTTGACTTTGAGTCTTTCTCCGGGTCCCCAGAGAGCAATTCCTCTTATCAGCTCAACTCCAAAAGCACACCAAATTGTTTCCCAGCTGAAAGTCCTGATCAGTCTTTTACCCCTGCAAGACCGACAAAGAGGCTCAAGAAATTCAGTACCTTGAACACTTGTGCCAGTGACTTAACGCCACACAAGGTTTCTGCTTCTCCATCCTCCCAACTAATTTCTTTTGAGCACTTTAATGCCCCATCACGTGCTTCCCAGCAATTTCACAACCCGGACTCCGATGTGAAGCCTGAAATCGAGAACGCGTGTAGTGAGAACATGGATTTTGCAGCTTTCGTTTCTCAAGGTTCATATGAGGACAAAAGTTTCCTAAGTTCTGATAATAGAACGAACCAGGTTGGCATGACCACTAGGAACCAAATCCAAGCTCAAGAGCATGTAATAGCTGAAAGAAAACGAAGGGAAAAGCTCAGCCAGAGATTCATTGCTCTTTCCGCCATCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTATAAAGTATGTGAAACAACTACAAGAGCGCGTGCAAACGCTGGAGGAGCAAGCAGCGAAGCGAACAGTTGGATCGGCGGTGCTGGTAAAAAGAACTATTCTCTTCGCCGACGATGAAAATTCCGACAACCCCTGCGACCATTCACTCCCCGAAATCGAAGTCAGAGTTTATGGGAAAGACGTACTCATCAGAACTCAGAGCGACAAACACAGTGGAATTGCGGCAACGATACTCAGCGAATTAGAAAAGCTTCATTTCATTGTCCAGAGTAGCAGCTCTTTGCCCTTCGGCAATAACAATATTGATGTAACTATTGTTGCTCAGATGAACAAGGAAAACAGCATGACAGCAAAGGATCTCCTAGGAAGGCTACGACAGGCTCTGAGGCAGTTGATTTGA 1053 0.4549 MTEIASTNYLPELELEYPTFFDQYYPMDSFASPLDDFDFESFSGSPESNSSYQLNSKSTPNCFPAESPDQSFTPARPTKRLKKFSTLNTCASDLTPHKVSASPSSQLISFEHFNAPSRASQQFHNPDSDVKPEIENACSENMDFAAFVSQGSYEDKSFLSSDNRTNQVGMTTRNQIQAQEHVIAERKRREKLSQRFIALSAILPGLKKMDKASVLGDAIKYVKQLQERVQTLEEQAAKRTVGSAVLVKRTILFADDENSDNPCDHSLPEIEVRVYGKDVLIRTQSDKHSGIAATILSELEKLHFIVQSSSSLPFGNNNIDVTIVAQMNKENSMTAKDLLGRLRQALRQLI 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2622 350 Gene3D - 174 244 IPR036638 GO:0046983
Ssu2g2622 350 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 348 - -
Ssu2g2622 350 MobiDBLite consensus disorder prediction 42 74 - -
Ssu2g2622 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 241 IPR036638 GO:0046983
Ssu2g2622 350 MobiDBLite consensus disorder prediction 41 76 - -
Ssu2g2622 350 Pfam Helix-loop-helix DNA-binding domain 179 226 IPR011598 GO:0046983
Ssu2g2622 350 CDD bHLH_AtNAI1_like 178 249 - -
Ssu2g2622 350 SMART finulus 182 231 IPR011598 GO:0046983
Ssu2g2622 350 Coils Coil 215 235 - -
Ssu2g2622 350 PANTHER BHLH TRANSCRIPTION FACTOR 1 348 - -
Ssu2g2622 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2622 Ssu-Chr2 85899648 85901309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2622 96 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.642 1.49e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g2622 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2622 - - gmx:100791810 530.02