Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2620 ATGCGTGTCCTCTTTCTGCTTCTGCTTCTCCATTTTCACTTCCCCCAAACCCTCTCTGCGCCAATCTCGGAGTACCGCGCCCTTCTCTCTCTCCGTTCAGCCATTACCGACGCCACCCCACCTGTTCTCTCTTCGTGGAACGCTTCCACCCCTTACTGTTCCTGGCTCGGAGTCACCTGCGACGCCCGCCGCCACGTCACCGCCCTCAACCTCACCGGCCTCGGCCTCACCGGCACGCTCTCCGGCGACGTCGCCCACCTCCCATTCCTCTCCAACCTCTCCCTCGCCGCCAACCACCTCTCCGGCCCCATCCCTCCGTCGCTCGCCGGCGTCTCCGGCCTCCGCCTCCTCAACCTCTCCAACAATGTCTTCAACGGCACCTTCCCTTCGCAGCTCTCGCGCCTCCAGAACCTCGAGGTCCTCGACCTCTACAACAACAACATGACCGGCGCGCTCCCCGTCGCCGCCGCGCAGATGGCGAACCTCCGCCACCTGCATCTCGGCGGCAACTTCTTCGCCGGCCAGATCCCGCCGGAGTACGGACGGTGGCCGCGCCTCGAGTACCTCGCCGTCTCCGGCAACGAGCTCGACGGGACAATCCCGCCGGAGATCGGGAACCTTACCAGCCTCCGGGAGCTCTACATCGGCTACTACAACAACTACGTCGGCGGCATTCCGCCGGAGATCGGGAACCTGTCGGAGCTGGTGCGGCTCGACGCCGCGTACTGCGGGCTCTCCGGCGAGATTCCGGCGGCGCTGGGGAAGCTTCAGAAGCTGGACACGCTGTTCCTTCAGGTGAATGCGCTGTCGGGGTCTCTGACGCCGGAGCTGGGGAACCTGAAGAGCTTGAGATCAATGGATTTGTCCAACAACATGCTCTCCGGTGAGATTCCGGCGAGTTTCGACGAGTTAAAGAATATAACGCTTGTGAACCTGTTCAGGAACAAGCTTCACGGAGCGATACCGGAGTTTGTAGGGGAGCTTCCGGTTTTGGAGGTGGTGCAGCTGTGGGAGAATAACTTCACGGGTAGCATTCCTGAGGGTTTGGGCAAGAATGGTAGACTCACGGTTGTTGATCTTTCTTCTAACAAATTAACCGGGACTCTGCCTCCTTACCTCTGTTCTGGGAACACTCTTCAGACTCTGATAGCTCTCGGGAATTTCCTTTTCGGTCCGATTCCTGAGTCGCTTGGGAGTTGTGAATCCCTGAACCGGATTCGAATGGGGGAGAATTTTCTCAACGGGTCCATTCCGAAAGGGCTTTTTGGACTTCCCAAACTCACGCAGGTTGAGCTTCAGGATAATTATCTCTCTGGAGGGTTCCCTGAGGCTGATTCTGTTTCTGATAATCTTGGTCAGATTACTCTCTCTAACAACCAGCTTTCTGGGCCTTTGCCTCCTTCCCTTGGTAACTTCTCCAGCGTGCAGAAGCTCCTTCTCGATGGCAACATGTTCTCGGGTCAGATCCCTCCTCAGATTGGGAGGATGCAACAGCTTTCCAAGATTGATTTTAGTGGCAACAAGTTCTCGGGTCCTGTTGTGCCTGAGATCGGTCAGTGCAAGCTGTTGACTTTCCTTGATCTTAGCCGCAATGAGCTCTCCGGGGAGATCCCAAATGAGATCACTGGCATGAGGATATTGAATTACCTTAATCTGTCGAGGAATCATCTAGTGGGCGGCATTCCCTCATCGATATCCTCGATGCAAAGTTTAACTTCGGTGGATTTTTCGTACAACAATCTATCTGGTTTGGTGCCTGGTACTGGGCAATTCAGCTACTTCAACTACACTTCTTTCTTGGGAAACCCTGACCTGTGTGGCCCCTATTTGGGTGCTTGCAAGGACGGGGTTGCCAATGGTGCCCACCAACCTCATGCTAAGGGACTCTCGTCTTCTTTGAAGCTGCTACTTGTTGTTGGTTTGCTTGTCTGTTCCATTTTATTTGCTGTGGCAGCAATATTCAAGGCTCGGTCACTGAAGAAGGCCAGTGAGGCCCGTGCATGGAAACTGACCGCGTTCCAACGTTTGGACTTCACCGTTGATGATGTTTTGCATTGCTTGAAGGAGGACAATATTATAGGGAAAGGTGGTGCTGGCATTGTCTACAAAGGGGCTATGCCTAATGGGGATCAGGTTGCTGTGAAAAGGCTTCCGGCTATGAGTAGAGGCTCTTCCCATGATCATGGGTTCAACGCGGAGATTCAGACATTGGGGCGAATCCGACACAGGCACATTGTTAGGTTGTTGGGTTTCTGTTCAAATCACGAGACAAACCTTTTGGTCTATGAGTACATGCCCAATGGAAGTTTAGGTGAAGTTCTTCATGGAAAGAAAGGGGGTCATTTGCATTGGGACACTAGATATAAAATTGCGGTGGAGGCTGCCAAGGGGCTTTGCTATCTGCACCATGATTGTTCGCCACTCATTGTCCATCGTGATGTGAAGTCAAACAACATCCTTCTTGATTCTAATCATGAAGCCCATGTTGCTGATTTTGGGCTTGCCAAGTTCCTGCAAGATTCTGGGACATCTGAATGCATGTCTGCTATTGCTGGTTCGTATGGATACATAGCTCCAGAGTATGCCTACACATTGAAAGTTGATGAGAAAAGCGATGTGTACAGTTTTGGTGTGGTTCTCTTAGAACTTGTAACAGGCAGGAAACCggttggagaatttggtgacGGCGTGGACATTGTGCAATGGGTCAGGAAAATGACGGACTCTAACAAGGAAGGAGTTCTAAAAGTTCTTGATCCTAGGCTTCCCTCAGTTCCCCTTCACGAAGTGATGCATGTTTTCTATGTAGCCATGCTGTGTGTTGAAGAACAGGCTGTAGAGAGACCAACTATGCGTGAAGTTGTTCAAATACTGACAGAGCTTCCAAAACCACCTGGCTTTAAACAGGGGGACTTGACTATAACAGAATCctctttgtcatcatcaaatGCTTTAGAATCTCCATCCGCAGCCTCTAAAGATAATCAAAATCCTCTTCAATCCCCACCAACCGATCTTCTTAGCATTTAA 3030 0.5155 MRVLFLLLLLHFHFPQTLSAPISEYRALLSLRSAITDATPPVLSSWNASTPYCSWLGVTCDARRHVTALNLTGLGLTGTLSGDVAHLPFLSNLSLAANHLSGPIPPSLAGVSGLRLLNLSNNVFNGTFPSQLSRLQNLEVLDLYNNNMTGALPVAAAQMANLRHLHLGGNFFAGQIPPEYGRWPRLEYLAVSGNELDGTIPPEIGNLTSLRELYIGYYNNYVGGIPPEIGNLSELVRLDAAYCGLSGEIPAALGKLQKLDTLFLQVNALSGSLTPELGNLKSLRSMDLSNNMLSGEIPASFDELKNITLVNLFRNKLHGAIPEFVGELPVLEVVQLWENNFTGSIPEGLGKNGRLTVVDLSSNKLTGTLPPYLCSGNTLQTLIALGNFLFGPIPESLGSCESLNRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGGFPEADSVSDNLGQITLSNNQLSGPLPPSLGNFSSVQKLLLDGNMFSGQIPPQIGRMQQLSKIDFSGNKFSGPVVPEIGQCKLLTFLDLSRNELSGEIPNEITGMRILNYLNLSRNHLVGGIPSSISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGACKDGVANGAHQPHAKGLSSSLKLLLVVGLLVCSILFAVAAIFKARSLKKASEARAWKLTAFQRLDFTVDDVLHCLKEDNIIGKGGAGIVYKGAMPNGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNHEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPGFKQGDLTITESSLSSSNALESPSAASKDNQNPLQSPPTDLLSI 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2620 1009 Gene3D Ribonuclease Inhibitor 22 217 IPR032675 -
Ssu2g2620 1009 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Ssu2g2620 1009 Gene3D Phosphorylase Kinase; domain 1 653 764 - -
Ssu2g2620 1009 MobiDBLite consensus disorder prediction 968 1009 - -
Ssu2g2620 1009 SUPERFAMILY Protein kinase-like (PK-like) 683 958 IPR011009 -
Ssu2g2620 1009 Gene3D Ribonuclease Inhibitor 326 619 IPR032675 -
Ssu2g2620 1009 SMART LRR_typ_2 159 183 IPR003591 -
Ssu2g2620 1009 SMART LRR_typ_2 135 158 IPR003591 -
Ssu2g2620 1009 SMART LRR_typ_2 568 591 IPR003591 -
Ssu2g2620 1009 SMART LRR_typ_2 353 376 IPR003591 -
Ssu2g2620 1009 SMART LRR_typ_2 328 352 IPR003591 -
Ssu2g2620 1009 SMART LRR_typ_2 280 303 IPR003591 -
Ssu2g2620 1009 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 999 - -
Ssu2g2620 1009 Gene3D Ribonuclease Inhibitor 218 325 IPR032675 -
Ssu2g2620 1009 SUPERFAMILY L domain-like 351 610 - -
Ssu2g2620 1009 MobiDBLite consensus disorder prediction 971 1009 - -
Ssu2g2620 1009 Pfam Protein tyrosine and serine/threonine kinase 689 958 IPR001245 GO:0004672|GO:0006468
Ssu2g2620 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Ssu2g2620 1009 ProSiteProfiles Protein kinase domain profile. 687 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2620 1009 Pfam Leucine Rich Repeat 282 304 IPR001611 GO:0005515
Ssu2g2620 1009 Pfam Leucine rich repeat 113 170 IPR001611 GO:0005515
Ssu2g2620 1009 SUPERFAMILY RNI-like 69 390 - -
Ssu2g2620 1009 Gene3D Transferase(Phosphotransferase) domain 1 765 968 - -
Ssu2g2620 1009 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 999 - -
Ssu2g2620 1009 SMART serkin_6 687 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2620 Ssu-Chr2 85854754 85858311 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2620 11 988 Receptor kinase-like Gene Family AT5G65700 80.041 0.0 1582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu2g2620 PK_Tyr_Ser-Thr 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2620 - - ccaj:109800149 1831.61