Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2618 ATGCCCCAACCCTTGttgctctttttgtttttatgttttagcgGTTTATCTCAAGGGGTGTCCCTGGAGAGAGAGTCTCAAATTCTACTTCAGGTCAAGACCACCCAGCTCCAAGACAAAAACAAGAGTCTCAAGAACTGGGTGCCCAACACAGACCACAACCCTTGCAACTGGACTGGCATTACCTGCGACGCACGACACCAATCACTTGTCTCCATTGACCTCTCCGAGATTGGCATTTACGGAGAGTTCCCCTTCGGTTTTTGTCGCATTCGCACCCTCCAAAACCTTTCTCTAGCATCCAATTTTCTCGGCAACGCTGTCTCCCCCAACTCTCTGCTTCTCTGTTCCCACCTCCGCCTCTTGAACCTCTCTGACAATTACTTCGTCGGAGACCTCCCGGAATTCCCGTCGGAGTTTACCGAACTAAGAGAACTAGACCTCTCGAAGAACAACTTCACCGGCGAAATTCCAGCGAGTTTTGGACAGCTTCCAAATCTGAGAGTGCTCTTGTTATCCGGAAACCTTCTCAGCGGAACGATCCCTCCCTTTTTAGGCAACCTCAGTGAGTTAACTCGTTTGGAACTAGCTTATAATCCCTTTAAACCAGGACCATTATCTTCCCAACTAGGAAACCTTTCTAATCTGGAGACACTGTACCTCGCCGAAGTAAACCTCGTAGGGGAAATTCCACACTCCATCGGGAACCTCACCTCGCTCAAGAACTTAGATTTGTCTCAAAACTCCTTGTCCGGTACCATCCCAAACAGCATTGCAGGCCTGAAAAGCGTGCAACAaattgaactatttgaaaaccAGCTTTCCGGCGAATTGCCCCAAGGTTTAGGAAACCTCAGCAGTTTAGTACTCTTGGACCTCTCTCAGAACGCTCTCACGGGAAAACTGCCAGACGCAATCGCTTCGTTGCATCTCTATTCTCTCAACCTGAACGACAACCTTCTAAAGGGAGAAATTCCTGAAAGTTTAGCTTCAAACCCGAATCTGCAGCAACTGAAACTCTTCAACAACAGCTTCACTGGGCAACTTCCACGAGATCTGGGGCGAAACTCTGACATACAGGAATTCGATGTCTCAACCAATGACTTCGTGGGAGAGTTGCCGAAGTACCTCTGCCAGAGGAACAAACTCGAGCGTGTCATCACGTTCGCGAATCGCTTCTCTGGAACGCTCCCTGACGAGTACGGCGAGTGTCGTTCCCTTCAATATGTCAGAATCCAGAACAACCAACTCTCTGGGCAAGTGCCACCAACATTTTGGGCCCTTACTGGGCTTCAGTTTCTGGAAATGTCCAACAACAGGTTCCAAGGTTCAGTCTCTGCTTCCATCGCTGGGGGACTCACCAAACTCATTTTGTCCGGTAACACTTTTTCTGGCCAATTCCCAACTGGAATATGTCAAGTTCACAACCTCCTGGAGATTGACGTCAGCAAGAACCGCTTCACCGGTGAAGTTCCCACGTGCGTAACTGGCTTAACTAAGTTACAGAAACTTAATATGCAAGAGAACATGTTCACCGGCGAGATTCCCCATAACGTGAGCCTCTGGACTGACATGACAGAGTTGAAGTTGTCATATAACCGATTATCCGGTTCAATCCCACCGGAACTTGGTAATTTACCGGATTTGACATACCTCGATCTCGCCGCTAATTCTTTAACGGGGGAGATTCCGGTGGAGTTAACGAACCTGAGGCTCAACCTGTTCAACGTCTCTGATAACAAGTTGCACGGGGAGCTTCCTTCAGGTTTCAACCACCAAGTGTACTTGTCGGGTCTAATGGGAAACCCCGGTCTCTGTAGCACCGTTATCAAAACCCTGCCTCCTTGTTCCAAACGCAGGCCGTTTTCTCTGCTTGCTGTTGTCGTTTTAGTTGCCTGCGTTTCGCTCCTTTTGGGGTCCATGTTGTGGTTCCTGAAGAGCAAGTCGCGTGGATTTGGAGGTAAATCTAAATCGAAGCGCTCCTTTACGTCAACCGCGTTCCAGAGAGTGGGGTTCAATGAAGACGACATAGTTCCGAACTTAACCAACGGGAACGTGATTGGCACAGGGAGTTCGGGTCGGGTCTACAGGGTGAGGGTCAAGACGGGGCAGACAGTGGCGGTGAAGAAGCTCTTTGGCGGTGCGCAAAAGCCTGATAGTGAATTTGTGTTCAGGGCGGAGATTGAGACGTTGGGTAGGATTCGGCATGCGAATATTGTGAAACTGTTGTTTAGTTGCAGCTGTGATGAGTTTAGGATACTGGTGTATGAGTACATGGAGAATGGGAGCTTAGGGGATGTGTTGCATGGTGAGGACAAGTGTGGGGAGTTAATGGATTGGTCTAGGAGGTTCGCGATTGCAGTGGGTGCGGCTCAGGGGTTGGCTTATTTGCACCATGATTGTGTGCCGGCTATTGTTCACAGGGACGTGAAGAGTAATAACATATTGCTGGACCGTGAGTTTGTGCCAAGAGTGGCAGACTTTGGGCTCGCTAAGACATTGCAGCGGGAGGCCACCCAGGGTGCTATGTCCAGGGTTGCTGGATCATATGGTTACATTGCTCCAGAGTATGCTTATACAATGAAAGTGACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGGTGCTGATGGAATTGATCACCGGCAAAAGGCCAAATGACTCTTCATTTGGTGAGAACAAGGATATAGTGAAATGGATCACTGAGACTGTTTTATCACCATCTCCTGAAAGAGGAAGTGGCGATATCGGGGGTGGTAAAGACTATATTGTGACTCAGATTGTGGACCCGAGATTTAACCCAGCCACTTGTGATTATGAAGAGGTTGAGAAGGTTTTAAATGTGGCTCTACTCTGCACCTCAGCGTTTCCCATTAATAGACCCTCAATGAGAAGGGTGGTTGAATTGCTCAAGGACCATAAACTGTCATGA 2931 0.4797 MPQPLLLFLFLCFSGLSQGVSLERESQILLQVKTTQLQDKNKSLKNWVPNTDHNPCNWTGITCDARHQSLVSIDLSEIGIYGEFPFGFCRIRTLQNLSLASNFLGNAVSPNSLLLCSHLRLLNLSDNYFVGDLPEFPSEFTELRELDLSKNNFTGEIPASFGQLPNLRVLLLSGNLLSGTIPPFLGNLSELTRLELAYNPFKPGPLSSQLGNLSNLETLYLAEVNLVGEIPHSIGNLTSLKNLDLSQNSLSGTIPNSIAGLKSVQQIELFENQLSGELPQGLGNLSSLVLLDLSQNALTGKLPDAIASLHLYSLNLNDNLLKGEIPESLASNPNLQQLKLFNNSFTGQLPRDLGRNSDIQEFDVSTNDFVGELPKYLCQRNKLERVITFANRFSGTLPDEYGECRSLQYVRIQNNQLSGQVPPTFWALTGLQFLEMSNNRFQGSVSASIAGGLTKLILSGNTFSGQFPTGICQVHNLLEIDVSKNRFTGEVPTCVTGLTKLQKLNMQENMFTGEIPHNVSLWTDMTELKLSYNRLSGSIPPELGNLPDLTYLDLAANSLTGEIPVELTNLRLNLFNVSDNKLHGELPSGFNHQVYLSGLMGNPGLCSTVIKTLPPCSKRRPFSLLAVVVLVACVSLLLGSMLWFLKSKSRGFGGKSKSKRSFTSTAFQRVGFNEDDIVPNLTNGNVIGTGSSGRVYRVRVKTGQTVAVKKLFGGAQKPDSEFVFRAEIETLGRIRHANIVKLLFSCSCDEFRILVYEYMENGSLGDVLHGEDKCGELMDWSRRFAIAVGAAQGLAYLHHDCVPAIVHRDVKSNNILLDREFVPRVADFGLAKTLQREATQGAMSRVAGSYGYIAPEYAYTMKVTEKSDVYSFGVVLMELITGKRPNDSSFGENKDIVKWITETVLSPSPERGSGDIGGGKDYIVTQIVDPRFNPATCDYEEVEKVLNVALLCTSAFPINRPSMRRVVELLKDHKLS 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2618 976 Gene3D Ribonuclease Inhibitor 310 621 IPR032675 -
Ssu2g2618 976 SMART LRR_typ_2 498 522 IPR003591 -
Ssu2g2618 976 SMART LRR_typ_2 428 451 IPR003591 -
Ssu2g2618 976 SMART LRR_typ_2 164 188 IPR003591 -
Ssu2g2618 976 SMART LRR_typ_2 285 308 IPR003591 -
Ssu2g2618 976 SMART LRR_typ_2 140 163 IPR003591 -
Ssu2g2618 976 SMART LRR_typ_2 546 570 IPR003591 -
Ssu2g2618 976 SMART LRR_typ_2 237 261 IPR003591 -
Ssu2g2618 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Ssu2g2618 976 Gene3D Transferase(Phosphotransferase) domain 1 759 976 - -
Ssu2g2618 976 SUPERFAMILY Protein kinase-like (PK-like) 677 970 IPR011009 -
Ssu2g2618 976 Pfam Leucine rich repeat 214 274 IPR001611 GO:0005515
Ssu2g2618 976 Pfam Leucine rich repeat 142 200 IPR001611 GO:0005515
Ssu2g2618 976 SMART serkin_6 681 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2618 976 Gene3D Ribonuclease Inhibitor 205 309 IPR032675 -
Ssu2g2618 976 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 974 - -
Ssu2g2618 976 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2 8 974 - -
Ssu2g2618 976 PRINTS Leucine-rich repeat signature 240 253 - -
Ssu2g2618 976 PRINTS Leucine-rich repeat signature 285 298 - -
Ssu2g2618 976 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Ssu2g2618 976 Gene3D Ribonuclease Inhibitor 20 204 IPR032675 -
Ssu2g2618 976 Pfam Protein kinase domain 683 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2618 976 ProSiteProfiles Protein kinase domain profile. 681 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2618 976 SUPERFAMILY L domain-like 311 587 - -
Ssu2g2618 976 SUPERFAMILY RNI-like 66 379 - -
Ssu2g2618 976 Gene3D Phosphorylase Kinase; domain 1 665 758 - -
Ssu2g2618 976 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2618 Ssu-Chr2 85799477 85802830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2618 20 974 Receptor kinase-like Gene Family AT5G65710 57.172 0.0 1061
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu2g2618 Pkinase 6.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2618 - - gmx:100813889 1667.51