Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2607 ATGAGCCCTTTAAACCACACCATATCCATAATTTTCCAACTGAAGCAGATACGTACATCTCTCCCACCgctttattctctctctcacaTGGGTCTTGATCAGGATGCCAATAGCTCAGGCCTTCACCTCGTTCTAGGGTTATCTTTGACTGCTACCGCAAAGGCAACCGCTCCATCCACCAAGCCTGATGATCATCATCTCTGCGTTATTAAGCCAACGCCAACGAAGCCTTATTCCTCGAACGAACCATCCTTAACGTTGGGTCTGTCCGGTGAGAGTTATTACCACGTGGCGAAGCAAGTGCCCAGAAATAACGTCGGCAACAACAACAAGGTTTATTGCGAGGACCACCCTCTTGACTTGACGAGACAGACATCACCTCACAGCGTCGTTTCGTCTTTCTCAACTGGGAGGGTCGTCAAGAGGGAGAGGGACCTTAGCTGTGAAGACGTAGAGGTAGAGGCAGAAGAGAGGGTTTCTTCAAGAGTGAGCGACGAAGACGAAGACGGCACCAATGCTAGAAAAAAGCTCAGGCTCACCAAAGAACAATCCGCACTGCTAGAGCAGAGCTTCAAACAACACAGCACTCTCAATCctAAACAGAAGCAAGCTTTAGCCAGGCAGTTAAACCTACGGCCTCGCCAAGTCGAAGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGTGAGTTCTTAAAGAAATGCTGTGAAACGTTGACGGACGAAAACAGGAGGCTAAAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAACTAGCTCAGCCCTTGTACATGCCTATGCCTGCGGCCACACTCACCATGTGCCCTTCTTGCGAGAGGCTCGGTGGCGTTAACGATAACGGTTCCAATAAAGGCCCCTTCTCCATGGCTCCCAAGCCTCACTTCTACAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 960 0.4927 MSPLNHTISIIFQLKQIRTSLPPLYSLSHMGLDQDANSSGLHLVLGLSLTATAKATAPSTKPDDHHLCVIKPTPTKPYSSNEPSLTLGLSGESYYHVAKQVPRNNVGNNNKVYCEDHPLDLTRQTSPHSVVSSFSTGRVVKRERDLSCEDVEVEAEERVSSRVSDEDEDGTNARKKLRLTKEQSALLEQSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVNDNGSNKGPFSMAPKPHFYNPFANPSAAC 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2607 319 CDD homeodomain 174 231 IPR001356 GO:0003677
Ssu2g2607 319 PANTHER - 40 319 - -
Ssu2g2607 319 SMART HOX_1 172 234 IPR001356 GO:0003677
Ssu2g2607 319 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 40 319 - -
Ssu2g2607 319 Gene3D - 178 228 - -
Ssu2g2607 319 Pfam Homeobox associated leucine zipper 230 264 IPR003106 GO:0006355|GO:0043565
Ssu2g2607 319 MobiDBLite consensus disorder prediction 157 177 - -
Ssu2g2607 319 Pfam Homeodomain 174 228 IPR001356 GO:0003677
Ssu2g2607 319 Coils Coil 236 266 - -
Ssu2g2607 319 SUPERFAMILY Homeodomain-like 165 231 IPR009057 -
Ssu2g2607 319 SMART halz 230 273 IPR003106 GO:0006355|GO:0043565
Ssu2g2607 319 ProSiteProfiles 'Homeobox' domain profile. 170 230 IPR001356 GO:0003677
Ssu2g2607 319 ProSitePatterns 'Homeobox' domain signature. 205 228 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2607 Ssu-Chr2 85673381 85674798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2607 30 319 Homeobox Transcription Factor Family AT4G37790 59.804 1.73e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu2g2607 Homeodomain 4.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2607 K09338 - gmx:100795135 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2607 2 85673381 85674798 Ssu6g1752 6 29792526 29793911 PCT