Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2601 ATGAAGCCTATTGAAAATGATGATACCATTAAGATCAACCATCAAAATAGCTGGTTAGGCTTCTCCCTCTCCCCACAAATGAATATAGGTGTTCCTTCACGCTCTCATCAAACACAGCCTTCAACTACTGCTGCTGAAACAGTTTCACCAACATTTTACCATCATACACCTCTTCATAACTATGGCCTTTACTGTGGACTCGAAGGTGAACATGTTGGAATGTGTTCATCCTTGCCTATCATGCCCCTTAAATCCAATGGCTCGCTCTACGGATTTGAAGCTCGGAGTAGATCACAAGCACAAGCAATGGCAACTACTTCAGCGATGCATCCGAGCTTAGATAGCATGTTTTACAACCAACTCTTGTACCATGGCTCAAACAATTCAAATAACCCAAATCACGTTCAAGAGAATATCAGCCAGCAACAGTTCTCATATTACTCTACCTTAAAAAACCATGATATGATTTTGGAAGGGTCCAAACACCAGCTCCCATATATAGCTGAGGATGAAATTCCTGGTCCGAAGAGTTGGTTCTCAAGGGACTTTCCTGCTAGCCACGCACAGGAATCAAGGTTGATTATTCCTTTGGATGATAATGGACCCGAATCTGGATCCATTGGATCAATGACATATGGGGATTTCCATTCATTGAACTTGTCTGTGAGTACTCCTACCTCACAATCAAGTTGTGTTACAAGTTCACCTCCTCTCACTGGTACTGTTGCCATGGATACGAAGAAAAGGGGGCTTGAAATGGTGGACCAGAATCAGAAGCAAATAGTTCATAGGAAATCCATAGATACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGcaaaagaagaaaaatcaatCCTTACACAAAtgcttccaaaatttttattatagggGGTTATGATTTGGAAGAAAAAGCTGCAAGAGCTTATGATATGGCCGCACTCAAGTATTGGGGACCCTCCTCTCATATAAATTTCCCGTTGGAAAATTATCAAAACGAACTTGACGAAATGAAGAACATGACCAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGGGCCTCCATGTACAGAGGAGTAACAAGGCACCATCAACATGGAAGGTGGCAAGCTCGAATCGGGAGAGTAGCTGGAAACAAGGATCTATATCTTGGAACCTTCAGTACTCAAGAGGAAGCAGCTGAAGCCTACGACATTGCTGCTATAAAATTCCGAGGAGTTAATGCTGTTACCAACTTTGATATAACAAGATATGACGTGGAAAAAATTATGGCAAGCAGTAACCTTCTTAGCAGTGAACAAGCTAAGCGGAGCAGAGAGATGGATGATGGAACTAGAAACGAGGCTATTGTTAACCGAAAACCTTCTACATGTGACCACACTAAAGAAAACATTCTAATGCAGAAAAGCTGCAAGATGGTTCTCTATCCATCCTCCCAACAGGTTGACCAGAATCCACCAAGAATTGAGAGTTGTAGAACCCAGCCCTTCTCAATGGCTttagataacatatttcatCAAGAAGTAGAGGAATTGAGTAACATGGGAACACACTTGTCAAATCCTCCTTCTCTGGTGACAAGCTTGAGTAGCTCGAGAGAAGAGAGCCCAGATAAGACAAGCTCGCCAATGCTCTTTGGAATGCCTTCAACAGTGTCTAAATTATTTGCTAACATTCCAACAAGTAACGTGGATTCTTGGGATCTATCTTCCAATCTCAGGCCTGCGCTTGCTTTGCCTCAGATGCCAATTTTTGCTGCTTGGACCGATGCATAA 1803 0.4126 MKPIENDDTIKINHQNSWLGFSLSPQMNIGVPSRSHQTQPSTTAAETVSPTFYHHTPLHNYGLYCGLEGEHVGMCSSLPIMPLKSNGSLYGFEARSRSQAQAMATTSAMHPSLDSMFYNQLLYHGSNNSNNPNHVQENISQQQFSYYSTLKNHDMILEGSKHQLPYIAEDEIPGPKSWFSRDFPASHAQESRLIIPLDDNGPESGSIGSMTYGDFHSLNLSVSTPTSQSSCVTSSPPLTGTVAMDTKKRGLEMVDQNQKQIVHRKSIDTFGQRTSQYRGVTSKRRKINPYTNASKIFIIGGYDLEEKAARAYDMAALKYWGPSSHINFPLENYQNELDEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASSNLLSSEQAKRSREMDDGTRNEAIVNRKPSTCDHTKENILMQKSCKMVLYPSSQQVDQNPPRIESCRTQPFSMALDNIFHQEVEELSNMGTHLSNPPSLVTSLSSSREESPDKTSSPMLFGMPSTVSKLFANIPTSNVDSWDLSSNLRPALALPQMPIFAAWTDA 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2601 600 CDD AP2 364 425 IPR001471 GO:0003700|GO:0006355
Ssu2g2601 600 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 107 598 - -
Ssu2g2601 600 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 107 598 - -
Ssu2g2601 600 MobiDBLite consensus disorder prediction 525 553 - -
Ssu2g2601 600 SUPERFAMILY DNA-binding domain 276 331 IPR016177 GO:0003677
Ssu2g2601 600 Pfam AP2 domain 366 415 IPR001471 GO:0003700|GO:0006355
Ssu2g2601 600 ProSiteProfiles AP2/ERF domain profile. 365 423 IPR001471 GO:0003700|GO:0006355
Ssu2g2601 600 ProSiteProfiles AP2/ERF domain profile. 247 329 IPR001471 GO:0003700|GO:0006355
Ssu2g2601 600 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 117 - -
Ssu2g2601 600 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 14 117 - -
Ssu2g2601 600 SMART rav1_2 365 429 IPR001471 GO:0003700|GO:0006355
Ssu2g2601 600 SMART rav1_2 276 335 IPR001471 GO:0003700|GO:0006355
Ssu2g2601 600 Gene3D AP2/ERF domain 275 331 IPR036955 GO:0003700|GO:0006355
Ssu2g2601 600 Gene3D AP2/ERF domain 365 425 IPR036955 GO:0003700|GO:0006355
Ssu2g2601 600 SUPERFAMILY DNA-binding domain 364 424 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2601 Ssu-Chr2 85442000 85445256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2601 5 600 AP2-EREBP Transcription Factor Family AT4G37750 40.630 3.49e-115 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu2g2601 AP2 9.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2601 K09285 - gmx:100812275 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2601 2 85442000 85445256 Ssu6g1759 6 29998311 30001884 PCT