Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2599 ATGCTTTCTGCTCTTTTTGCTTCCGACCCTTTACAGGGAAACCCATTCTCGGCGTTGGACTACGGTTTCACGTCGTGGGATGGGCCTGACTTTTTGGGCTTCAAGCCCACAAGCCCCAACCCAGTCGTCAGTTCGAGTTCCGGTTCGGACGACCCCAACCGAACCCATGCGGATGAAAAACAGGCCTCGGAGGAGTCGAACCGCGTTGAGTCCGTCATGGAGGAGCGAAAGCGCAGGCGAATGATATCGAACCGGGAATCGGCCCGAAGGTCGCGCATGCGTAAACAGAGACACCTAGAGAACTTACGGAACCAGGTGAACCTGTTTAGGGTTGAAAACCGGGAACTGAACAACGGGCTGCAGTTCCTCCTTCACCACTGTAGCCGCCTAGTAACCGAAAACCAGTGGCTCCGGTCCGAGCGAACCCTGCTACGCCAAAAACTGGccaacataaatcaaattttggttttCCAACAATTGCAACCCTTTTCCTCTGCATGGCCCTGCAATATTGTCACCACGGAATAA 528 0.5227 MLSALFASDPLQGNPFSALDYGFTSWDGPDFLGFKPTSPNPVVSSSSGSDDPNRTHADEKQASEESNRVESVMEERKRRRMISNRESARRSRMRKQRHLENLRNQVNLFRVENRELNNGLQFLLHHCSRLVTENQWLRSERTLLRQKLANINQILVFQQLQPFSSAWPCNIVTTE 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2599 175 MobiDBLite consensus disorder prediction 52 89 - -
Ssu2g2599 175 Pfam bZIP transcription factor 76 134 IPR004827 GO:0003700|GO:0006355
Ssu2g2599 175 Gene3D - 74 154 - -
Ssu2g2599 175 CDD bZIP_plant_GBF1 77 128 IPR045314 GO:0003700|GO:0006355
Ssu2g2599 175 Coils Coil 85 119 - -
Ssu2g2599 175 SUPERFAMILY Leucine zipper domain 76 128 IPR046347 GO:0003700|GO:0006355
Ssu2g2599 175 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 74 123 IPR004827 GO:0003700|GO:0006355
Ssu2g2599 175 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 79 94 IPR004827 GO:0003700|GO:0006355
Ssu2g2599 175 PANTHER BZIP TRANSCRIPTION FACTOR 26 175 - -
Ssu2g2599 175 MobiDBLite consensus disorder prediction 34 95 - -
Ssu2g2599 175 PANTHER BZIP TRANSCRIPTION FACTOR 44 26 175 - -
Ssu2g2599 175 SMART brlzneu 72 136 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2599 Ssu-Chr2 85391495 85392022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2599 3 161 bZIP Transcription Factor Family AT2G22850 37.363 6.39e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu2g2599 bZIP_1 8.2e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2599 - - gmx:102667230 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2599 2 85391495 85392022 Ssu6g1765 6 30089196 30089681 PCT