Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2591 ATGCCGATGTTTCAGCCTTGTCGGAAGGACATGGTTGCCGGGTACGAGGGTGGCGGCGACGGCCAGATTCTAGATCTGGACACGGCCGTGAAGGACGGCGTTTTGGGCGGCGTCGAGGGCGGCGTAgtggggagtggggttagtgaGAAGGTGGATCTGGGGAGGATGATTGAGGAGCTCGAGTTATGCGAAGTGCCGAGCGTGTTCATTTGCCCAATCTCTTTGGAACCAATGCAAGACCCTGTGACGCTTTGCACGGGCCAAACCTACGAGAGGTCCAACATTCTTAAATGGTTCAACCTGGGGCACTTCACCTGCCCCACCACGATGCAGGAGCTCTGGGACGATTCCATCACCCCGAACACCACCCTCTACAGGCTCACTCACACGTGGTTCTCTCAGAAGTACTTGCTCGTGAAGAAGAGGTCAGAGGACGTTCAGGGAAGGGCTTCTGAGCTTCTCGAGACACTCAAGAAGGTGAAGGGCCAGGCTCGGGTTCAGGCCCTCAAGGAGCTGCACCAGCTGGTCTCTTCTCATTCCACTGCACGCAAGACTGTGATTGACGAAGGTGGGGTGTCTGTTGTGTCTTCTCTGCTCGGTCCTTTTACTTCCCATGCTGTTGGCTCTGAGGTTATTGGGATTCTTGTGGGTTTGACCCTTGATTCGGAATCTAGGAAGAATCTCTTGCAGCCTGCTAAGATTTCCTTGATGGTGGACATCTTGAATGAGGGTTCCATTGAGACGAAGATCAATTGCACGCGGCTGATCGAATCGTTGATCGAGGAGAAGGATTTTCGATCGAGGTTATCTCCAGTCACAGCCTCTTGGTTGGGTTGA 837 0.5257 MPMFQPCRKDMVAGYEGGGDGQILDLDTAVKDGVLGGVEGGVVGSGVSEKVDLGRMIEELELCEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHFTCPTTMQELWDDSITPNTTLYRLTHTWFSQKYLLVKKRSEDVQGRASELLETLKKVKGQARVQALKELHQLVSSHSTARKTVIDEGGVSVVSSLLGPFTSHAVGSEVIGILVGLTLDSESRKNLLQPAKISLMVDILNEGSIETKINCTRLIESLIEEKDFRSRLSPVTASWLG 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2591 278 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Ssu2g2591 278 Gene3D - 143 270 IPR011989 -
Ssu2g2591 278 PANTHER WDSAM1 PROTEIN 37 268 IPR045185 GO:0061630
Ssu2g2591 278 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Ssu2g2591 278 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 37 268 - -
Ssu2g2591 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 142 IPR013083 -
Ssu2g2591 278 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Ssu2g2591 278 CDD RING-Ubox_PUB 69 111 IPR045210 -
Ssu2g2591 278 SUPERFAMILY RING/U-box 59 135 - -
Ssu2g2591 278 SUPERFAMILY ARM repeat 152 270 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2591 Ssu-Chr2 85309012 85309848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2591 1 269 U-box Gene Family AT3G49810 72.119 2.57e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2591 - - gmx:100779827 489.96