Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2585 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCTTTGAAAGCTGGAGTACTCAAGCATGGGGCTGGGAAATGGCGCACCATACTTACAGACCCAGAGTTCAGTTCCATTTTGCACATGCGTTCAAATGTAGATCTCAAGGATAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCTAGGCAGAAGGCAAAGCTTGCTCTTAAAAAGAACCTACCATCCCCCAAAATTGACAATAACCACATGGCCTTGAGTACTGTAGTTCAACGTGACAAAGAAGTTGCTGATCCCAAGCCTCTGGCAGTTTCTAGTGGAACATCTCCTAattcaaaggaaaaaatatcAAGGCTACAGAACTTCCAgTTGGATAATCTTATATTAGAGTCCATTATCAAGTTAAGGGAGCCAAAGGGTTCTGACAGGGCCGCCATTGCTGCATATATAGAGGATCAATACGGTTCTCCACCGACCCTCAGGAAGTTACTATCAACAAAACTGAACCACATGGTGGCAAGTGGAAAATTAATGAAGGTAAAGCATAAGTACAGGATTGCAACAAATTTAACCATATCTGAGAAAAGAAGATGCTCTTCCTTGTTGCTCCTGGAAGGGAGGCCCAAAGATTCTCCAAAGGCAGAGAAGACTGATATCAACATCCTTTCAAAATCCGAAATTGATGCAGAGCTATCAAAAATGAAGGGTGTGACACCTCAAGAGGCAGCAGCGGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCCGAGGCTGAGGCAGCAGCTAGGGAGGCAGACGCTGCAGAAGCCGAGGCAGAGGCTGCACGAGTGTTCGCGAAAGCAGCAATGAAGGCACTAAAATGCAAGACACTTCATATTTGGACTGGGTACGTGAAGGAGGCTGGTTCAGATGTTTGGGAGTGGGCATACTAG 945 0.4529 MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSSILHMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPSPKIDNNHMALSTVVQRDKEVADPKPLAVSSGTSPNSKEKISRLQNFQLDNLILESIIKLREPKGSDRAAIAAYIEDQYGSPPTLRKLLSTKLNHMVASGKLMKVKHKYRIATNLTISEKRRCSSLLLLEGRPKDSPKAEKTDINILSKSEIDAELSKMKGVTPQEAAAAAAKAVAEAEAAIAEAEAAAREADAAEAEAEAARVFAKAAMKALKCKTLHIWTGYVKEAGSDVWEWAY 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2585 314 Gene3D - 122 220 IPR036388 -
Ssu2g2585 314 SMART sant 4 59 IPR001005 -
Ssu2g2585 314 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Ssu2g2585 314 Gene3D - 2 59 - -
Ssu2g2585 314 CDD SANT_TRF 6 57 - -
Ssu2g2585 314 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 122 190 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu2g2585 314 Coils Coil 245 279 - -
Ssu2g2585 314 Pfam linker histone H1 and H5 family 127 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu2g2585 314 SMART h15plus2 120 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu2g2585 314 SUPERFAMILY "Winged helix" DNA-binding domain 123 199 IPR036390 -
Ssu2g2585 314 PANTHER MYB TRANSCRIPTION FACTOR 1 297 - -
Ssu2g2585 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Ssu2g2585 314 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Ssu2g2585 314 PANTHER SINGLE MYB HISTONE 4 1 297 IPR044597 GO:0003691
Ssu2g2585 314 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2585 Ssu-Chr2 85189022 85192794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2585 1 298 Single Myb Histone (SMH) Gene Family AT5G67580 54.817 1.81e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu2g2585 Linker_histone 8.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2585 K09422 - gmx:778165 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2585 2 85189022 85192794 Ssu6g1778 6 30400626 30403460 PCT