Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2573 ATGGAGAGTTATTTAAACGAGAATTTTGAAGTGAAGTCCAAGAACTCCTCTGAAGAGGCTCTTCAAAGATGGAGGACACTATGCGGGTTCGTGAAAAACTCCAAACGACGCTTTCGTTTCACTGCCAATCTCCCCAAGAGGGACGAAGCCGCTGCCATGCGTCGTACCAATCAgGAGAAGCTGAGAGTTGCAGTTTTGGTTTCCAAAGCAGCATTTCAATTTATCCAAGGCGTGCAACTAAGCGATTACAAAGTGCCAGAGGAAGTTAAAGCTGCAGGGTTTGAGATCTGTGGTGATGAATTGGGGTCTATTGTTGAAGGCCATGATGTAAAGAAGTTCAGACATCATGGTGGGGTTAATGGCATTGCAGAGAAACTGTCTACATCAACTACTGAGGGGCTTAACAGTGATACCGAGTTACTGAATAGGAGACAGCAGATATATggaatcaacaaatttactgaAAGTGAAGCTTCGAGTTTCTGGGTTTTTGTTTGGGAAGCCTTTCAAGACATGACTCTCATGATACTTGGAGTGTGTGCTATTGTGTCACTGATAGTTGGCATTGCAACTGAAGGATGGCCCAAGGGGGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTACTTGTTGTCTTTGTGACAGCAACAAGTGATTATCGTCAATCATTACAATTCAAGGATTTAGacaaggagaagaagaaaatttccATTCATGTTACAAGAAATGGATATAGACAGAAAATGTCAATATATGAATTACTTCCTGGTGACATTGTGCACCTTGCCATTGGTGACCAAGTCCCTGCTGATGGACTATTTGTCTCAGGATTTTCTGTGTTGATTGATGAGTCAAGCTTAACAGGAGAGAGTGAACCAGTGATGGTGAATTCTGAAAATCCATTTCTTCTTTCTGGAACCAAGGTCCAAGATGGATCATGCAAGATGTTGGTTACCAGTGTTGGCATGAGGACTCAATGGGGTAAATTGATGGCTACTCTTAGTGAAGGTGGAGATGATGAAACCCCATTACAGGTGAAGTTGAATGGTGTGGCAACCATTATTGGGAAGATAGGCCTATTCTTTGCCGTGGTTACTTTTGCAGTTCTGGTGCAAGGACTCATAGGCCAAAAACTCCAACAAGGAAGTCTATGGAGCTGGACTGGGGATGATGCATTGGAGCTATTGGAGTTCTTTGCAATTGCAGTTACCatagttgttgttgctgttcCAGAGGGGCTGCCATTAGCCGTGACACTGAGCCTTGCATTTGCtatgaagaaaatgatgaaTGACAAAGCCCTTGTGAGACATTTGGCAGCCTGTGAGACCATGGGATCAGCCACAACTATATGTAGTGACAAGACTGGGACACTAACAACCAATCACATGACTGTTGTGAAAACATGCTTTTGCATGAACAGCAAGGAAGTGAGCAGTAAGGCTTCTAGTTTGTGCTCTGAACTCCCAGAATCTGCTGTGGAACTGCTGCTACAGTCAATATTCAATAATACAGGAGGAGAGGTTGTGGTTAACCAAATTGGAAAACGTGAGATTTTAGGGACTCCAACCGAGACTGCAATATTGGAGTTTGGTTTGTCATTAGGTGGAGATTTTCAAGGAGCGAGACAAGCATGTAAACTTGTTAAAGTTGAGCCATTCAATTCtactaagaaaaaaatgagtgtggtGGTGGAGCTCCCTGGTGGAGGCTTAAGAGCCCACTGTAAAGGTGCTTCTGAAATAATTCTGGCTGCTTGTGACAAAGTTCTCAACTCAAATGGAGAGGTTGTACCCCTTGATGAAGAATCAACTAGCCATCTTAAGGCTACAATAAACCAGTTTGCAAGTGAGGCACTTAGAACTCTATGCCTTGCCTATATGGAATTGGAAAACGGGTTCTCTCCTGAAGACCCTATTCCTGTTTCTGGATTTACTTGTATAGGAGTTGTTGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAATCTGTGGCAGTCTGTCGTTCAGCTGGAATAACAGTAAGAATGGTTACCGGGGACAACATTTATACTGCAAAGGCTATAGCCAGGGAGTGTGGGATTTTAACTGATGATGGTATAGCCATTGAAGGTCCAGAGTTTAGAGAGAAGAGTCAGGAAGAGTTGCTTGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCCTCACCTTTAGACAAGCATACATTGGTGAAACACTTGCGTACCACATTTGGGGAAGTGGTAGCTGTAACAGGTGATGGAACTAATGATGCCCCGGCTCTTCACGAAGCTGACATTGGACTTGCAATGGGCATTGCTGGTACCGAGGTCGCAAAGGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACGATAGTAACAGTGGCCAAATGGGGACGTTCGGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGCTGACCGTTAATGTGGTTGCATTAATAGTGAACTTCACATCAGCCTGCTTGACGGGAACTGCGCCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACACTGGGAGCACTTGCGCTTGCTACTGAACCTCCAAATGATGATTTAATGAAACGTTCACCTGTTGGAAGGAAGGGGAATTTCATCAGCAATGTCATGTGGAGGAACATCTTAGGACAATCGTTGTATCAGTTTATGGTGATATGGTTTCTTCAGTCAAGAggaaaatcaatctttttaCTTAACGGCCCCAACTCAGATCTGGTCTTAAACACGCTTATTTTCAACTCATTTGTGTTCTGTCAGGTTTTCAATGAGATAAACTCACGTGAAATggagaaaataaatgtttttaaaggcATATTGGATAACTATGTCTTCGTGGGAGTCATCAGTGCTACTGTTTTCTTCCAAATCATAATAGTTGAGTACTTGGGAACCTTCGCAAACACAACACCTCTCACCCTGGCACAGTGGTTCTTTTGCTTATTCGTTGGATTTTTGGGCATGCCTATTGCTGCTCGCTTAAAGAAGATCCCTGTCTGA 3042 0.4152 MESYLNENFEVKSKNSSEEALQRWRTLCGFVKNSKRRFRFTANLPKRDEAAAMRRTNQEKLRVAVLVSKAAFQFIQGVQLSDYKVPEEVKAAGFEICGDELGSIVEGHDVKKFRHHGGVNGIAEKLSTSTTEGLNSDTELLNRRQQIYGINKFTESEASSFWVFVWEAFQDMTLMILGVCAIVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIHVTRNGYRQKMSIYELLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVNSENPFLLSGTKVQDGSCKMLVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLIGQKLQQGSLWSWTGDDALELLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCFCMNSKEVSSKASSLCSELPESAVELLLQSIFNNTGGEVVVNQIGKREILGTPTETAILEFGLSLGGDFQGARQACKLVKVEPFNSTKKKMSVVVELPGGGLRAHCKGASEIILAACDKVLNSNGEVVPLDEESTSHLKATINQFASEALRTLCLAYMELENGFSPEDPIPVSGFTCIGVVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNIYTAKAIARECGILTDDGIAIEGPEFREKSQEELLELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTGTAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRSPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSRGKSIFLLNGPNSDLVLNTLIFNSFVFCQVFNEINSREMEKINVFKGILDNYVFVGVISATVFFQIIIVEYLGTFANTTPLTLAQWFFCLFVGFLGMPIAARLKKIPV 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2573 1013 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Ssu2g2573 1013 PANTHER CALCIUM-TRANSPORTING ATPASE 9 1012 - -
Ssu2g2573 1013 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Ssu2g2573 1013 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Ssu2g2573 1013 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Ssu2g2573 1013 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Ssu2g2573 1013 PRINTS P-type cation-transporting ATPase superfamily signature 649 660 - -
Ssu2g2573 1013 PRINTS P-type cation-transporting ATPase superfamily signature 671 681 - -
Ssu2g2573 1013 SFLD C1.7: P-type atpase like 434 804 - -
Ssu2g2573 1013 Gene3D - 462 656 IPR023299 GO:0000166
Ssu2g2573 1013 Pfam Cation transporter/ATPase, N-terminus 115 184 IPR004014 -
Ssu2g2573 1013 Gene3D - 449 797 IPR023214 -
Ssu2g2573 1013 SUPERFAMILY Calcium ATPase, transduction domain A 237 332 IPR008250 -
Ssu2g2573 1013 PANTHER CATION TRANSPORTING ATPASE 9 1012 - -
Ssu2g2573 1013 Pfam Cation transport ATPase (P-type) 513 590 - -
Ssu2g2573 1013 SUPERFAMILY HAD-like 450 857 IPR036412 -
Ssu2g2573 1013 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Ssu2g2573 1013 Gene3D - 167 1001 - -
Ssu2g2573 1013 Pfam E1-E2 ATPase 236 430 - -
Ssu2g2573 1013 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 661 IPR023299 GO:0000166
Ssu2g2573 1013 Gene3D - 139 335 - -
Ssu2g2573 1013 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 543 697 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g2573 1013 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 387 486 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g2573 1013 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 723 838 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g2573 1013 PRINTS H+-transporting ATPase (proton pump) signature 608 626 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g2573 1013 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g2573 1013 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g2573 1013 CDD P-type_ATPase_Ca_PMCA-like 141 885 - -
Ssu2g2573 1013 Gene3D - 16 76 - -
Ssu2g2573 1013 Pfam Cation transporting ATPase, C-terminus 837 1010 IPR006068 -
Ssu2g2573 1013 SMART Cation_ATPase_N_a_2 113 189 IPR004014 -
Ssu2g2573 1013 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 109 1013 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Ssu2g2573 1013 SFLD p-type atpase 434 804 IPR044492 -
Ssu2g2573 1013 SUPERFAMILY Calcium ATPase, transmembrane domain M 115 1012 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2573 Ssu-Chr2 85043978 85049142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2573 1 1013 Primary Pumps ATPases AT4G37640 82.939 0.0 1739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2573 K01537 - gmx:100792691 1881.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2573 2 85043978 85049142 Ssu6g1789 6 30530530 30535061 PCT