Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2571 ATGGACGGCAATTGTTGTAACTCTCTCCAGAATGCTAAGAAATTCGCTCCGGTACCGCCTCCTTTGCCCCGTTCAGCAGCAACCAGTTGTTCTTGTGAGTTTCTGGCTCCGCACAATTCAACACCAAGATGGCGCAGCAGCAATGTCTCTTCAGCAGCAAGAGATTTGTGGGAACGTCTTTTTGATCAAGGTTATAAAGCAGATGTTTGCATTAATACTGATAACGGTGGCGTTGTTTATGCTCATTCTAACATTCTTGCCATGGCTTCTCCCGTATTGAGGGGCACGCTGAAGCAAGCAAATCGTCGTGGCCGATGGCGAACAATCTCAATCATTGGTGTTCCACATGATGCAGTTCGAGTTTTTATTCGATTCTTGTACACGTCCAGctatgagaaagaagaaatggaTGAATTCGTCCTACATTTGTTGGTGCTGTCACATGTATACGTGGTCCCTCACTTGAAGCGTAAATGTGAACAGAAGCTAGAATTGGGTTTACTCACCATAGATAATGTGGTTGATGTATTTCAACTTGCCTTACTGTGTGATGCTCCAAGGCTCAGCCTCATTTGTCACCGCAAGGTgctaaaaaacttaaaagctGTTTCAGAGTCAGAAggatggaaaacaatgaagctGAGCCACCCGGTTctagaaaaggaaattttggAGTCAATGATTGATGAAGAAAATAGTAAAAAGGATAGGAttagaaaaatgaaggaaaggAAGATCTATCTGCAATTATACGAGGCCATGGAAGCTCTTGTTCACATATGTAGAGATGGTTGTCGAACTATTGGCCCTCATGATAAGGACTTCAAAGCAAACCAACCGTGCAAGTATGCAGCATGCAAGGGGCTAGAATTGCTTGTTCGTCATTTTGCTGGATGTAAATTGAGGGTCCCTGGTGGTTGTGTTCATTGCAAGAGGATGTGGCAATTATTGGAGCTACACTCCCGATTATGTGCTGATCCAGATTACTGTAGAGTACCTTTGTGCagGAACTTTAAGCAGCGAATATCAAAACAAAGCAAGAAAGACGAAATTAGGTGGAGAATATTGGTTGAAAAGATCTTGAGAACAAGAGGAATTGGGATAGCGTTGTGCTTTCTGGCGCAATGA 1128 0.4007 MDGNCCNSLQNAKKFAPVPPPLPRSAATSCSCEFLAPHNSTPRWRSSNVSSAARDLWERLFDQGYKADVCINTDNGGVVYAHSNILAMASPVLRGTLKQANRRGRWRTISIIGVPHDAVRVFIRFLYTSSYEKEEMDEFVLHLLVLSHVYVVPHLKRKCEQKLELGLLTIDNVVDVFQLALLCDAPRLSLICHRKVLKNLKAVSESEGWKTMKLSHPVLEKEILESMIDEENSKKDRIRKMKERKIYLQLYEAMEALVHICRDGCRTIGPHDKDFKANQPCKYAACKGLELLVRHFAGCKLRVPGGCVHCKRMWQLLELHSRLCADPDYCRVPLCRNFKQRISKQSKKDEIRWRILVEKILRTRGIGIALCFLAQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2571 375 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 8 373 IPR044513 -
Ssu2g2571 375 SUPERFAMILY POZ domain 44 163 IPR011333 -
Ssu2g2571 375 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 4 8 373 - -
Ssu2g2571 375 Gene3D - 168 242 - -
Ssu2g2571 375 Pfam BTB/POZ domain 59 163 IPR000210 GO:0005515
Ssu2g2571 375 ProSiteProfiles BTB domain profile. 67 135 IPR000210 GO:0005515
Ssu2g2571 375 Gene3D Potassium Channel Kv1.1; Chain A 37 167 IPR011333 -
Ssu2g2571 375 SMART BTB_4 67 167 IPR000210 GO:0005515
Ssu2g2571 375 Coils Coil 224 244 - -
Ssu2g2571 375 Gene3D TAZ domain 243 363 IPR035898 -
Ssu2g2571 375 SUPERFAMILY TAZ domain 244 344 IPR035898 -
Ssu2g2571 375 CDD BACK 169 226 - -
Ssu2g2571 375 SMART TAZ_2 244 336 IPR000197 -
Ssu2g2571 375 Pfam TAZ zinc finger 251 335 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2571 Ssu-Chr2 85017314 85019199 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Ssu2g2571 BTB 6.8e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2571 - - gmx:100807461 640.958