Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2570 ATGAAAGCTCGGCAATTGAGCTTCTTCTACATCATCGTCGTTACACTGTCCCTATCCACCCCAGTCAACATTGCCAAAGGGGTCAACACCACCGAATCTGGCACCAGAAGAATCCTTCACCAGCCACTGTTCCCGGCGAGTTCGGCGCCGCCGCCAGCAGGCGCTGCGTCTCCGCCGCCACCGCCGGCGGAGACCCCTCCATCTCCGGACGGCGACAACATCCCCTTCTTCCACGAGTACCCGGCGGGGCCCCCGCCGGATCAGAACCAGGCAGCACCGTCGACTTCCAACGCCACAATCGCGAACCCAACCGCCACGCAACCGACAAAGGGAACGAAAAAGGTAGCAATCGCGATCTCCGTGGGGATTGTGACGCTTGGGATGCTCTCGGCACTCGCGTTCTTCTTATACAAACACAGAGCCAAACGCCCCGCGGAGACGCAGAAGCTCGTGGGCGGGAGCGAGAACAACGATAACCCGAACAGGAACAGCGAGGACGCAAACACAACCGCGCCGCCGTCGAGCTTCCTCTACATTGGGACCGTGGAGCCGACACGAGCCTCTGCCGCATCGAACGGTTCGCGAGATGATAGAGAGGCGAGCAAGGCGAACAGATCGCCGTATCGCAAGCTCAAGCGATCCGACCGCTACAGGCCGAGTCCCGAGTTGCAGCCAATGCCGCCGCTGAGTAAGCCCCCCGACGGGAACTACCCGCCGGCGGTGTCCTCCTCGTCGGAGTCCTCCGACGAGGAGAGCCGCGGGACGGCGTTTCACTCGCCGCAGAACTCGTCGGTGGATGGTTACTACACACCGGCCTCGCGTCAGAGCGCCCTCGTTAACGGCAGTCCTGCTAAGAGAGACGCTAATCCCACTGCCACACCGTTTTCCAAGAGAACTTCGCCGAAGTCGCGCGTTTCGGCACCCTCCCCGGAGATAAGACACGTCATCATACCGTCTATAAAGCAGCCTCCACCACCGCCACCGCCGCCGCCGCAGCATTCCAGAAAGCCGAAATTCTCGGCGCCTCCCCCACCTCCGAATTTGAAGCATCTTCAGTTAACAACCGACAATGTTTTGCACGTGTCCAAGACTTCACTtaatcctcctcctcctcctcctcctcctccgccgccgccgccacctCCTCCACCGGCGCGAAAATCTGGGTCTCCGGCTTCTGCGTCCGTAAAGCGGCAGTCTTGGTCGCCAATTCAATCCAGTGTGGCGAAAGGTTCAGAGGAGTTTGATCAGAGTGTGGGCTCTTCCGAGAGGCTGGAAGCCAATGACGCGGAAGGAGCCAAACCCAAATTAAAGGCTCTGCATTGGGATAAAGTGCGTGCGACCTCAGACCGCGCTACAGTGTGGGACCAGATAAAATCGAGCTCGTTTCAGTTAAATGAGGACATGATGGAATCGTTGTTTGGCTGCAGAGCCACGAATTCTGCACCGAAAGAACCTCCTAGAAAATCAGTTCTTCCTTCCGTTGATCAGGAGAACAGGGTGTTGGACCCGAAGAAGTCACAGAACATAGCTATACTGCTCAGGGCTTTGAATGTGACCAGAGATGAGGTGTCCGAAGCTCTTTTAGATGGGAATCCTGAAGGTTTGGGCACTGAGCTATTGGAAACCCTAGTAAAGATGGCTCCTACTAAAGAGGAAgagataaaacttaaaaactacGATGGTGATCTCTCAAAACTTGGATCTGCAGAAAGATTTCTTAAAGCAGTGCTTGATACCCCTTTCGCCTTTAAAAGAGTTGAAGCTATGCTATACAGAGCCAACTTTGATGCAGAAGTTAACTACCTCAGGAAGTCTTTTCAAACCATGGAGGCTGCAAGTGAGGAATTAAGGAACAGCCGGTTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACAGGAAACAGAATGAATGTTGGCACTAATCGAGGGGATGCTAAAGCTTTCAAACTGGACACACTCCTAAAACTTGTAGATATAAAGGGAACAGATGGAAAGACTACATTGCTCCACTTTGTGGTCCAAGAGATCATTAGATCGGAAGGTGCAGGAGCTGAATCTGCAAATGAGAATGTGAAAATGGATTCCAAATTTAATGAGGATGAGTTTAAGAAGCAAGGATTGCAGGTTGTGGCAGGGCTCAGTAGAGATCTTAGTAATGTAAAAAAAGCAGCAGGAATGGATTCAGATGTCTTGAGCAGCTATCTTTCAAAGCTTGAAACAGGGCTTGATAAAGTGCGATTGGTTTTGCAATATGAGAAGCCGGATATGCAAGGCAATTTCTTTAACTCCACAAAGCTATTTCTGAAATATGCTGAAGATGAAATTGTAAGGAGTAAAGCAGATGAGAGAAAAGCCTTGTTCCTTGTGAAAGAAGTTACGGAATACTTTCACGGGAATGCAGCAAAGGAAGAAGCCCACCCTCTCAGAATTTTCATGATTGTAAGAGACTTTCTGAATATTTTGGATCTAGTGTGCAAAGAAGTGGAAAAGATGCATGATAGAATTGTTGGTGGTTCAGGCAGATCCTTCCGAATAGCTCCAAATGCATCATTACCTGTTCTCAACAGGTACAATTCAAAGCAGGATAGAAGCTCAGATGAGGAAAGCTCATCCCCTTAG 2622 0.4996 MKARQLSFFYIIVVTLSLSTPVNIAKGVNTTESGTRRILHQPLFPASSAPPPAGAASPPPPPAETPPSPDGDNIPFFHEYPAGPPPDQNQAAPSTSNATIANPTATQPTKGTKKVAIAISVGIVTLGMLSALAFFLYKHRAKRPAETQKLVGGSENNDNPNRNSEDANTTAPPSSFLYIGTVEPTRASAASNGSRDDREASKANRSPYRKLKRSDRYRPSPELQPMPPLSKPPDGNYPPAVSSSSESSDEESRGTAFHSPQNSSVDGYYTPASRQSALVNGSPAKRDANPTATPFSKRTSPKSRVSAPSPEIRHVIIPSIKQPPPPPPPPPQHSRKPKFSAPPPPPNLKHLQLTTDNVLHVSKTSLNPPPPPPPPPPPPPPPPPARKSGSPASASVKRQSWSPIQSSVAKGSEEFDQSVGSSERLEANDAEGAKPKLKALHWDKVRATSDRATVWDQIKSSSFQLNEDMMESLFGCRATNSAPKEPPRKSVLPSVDQENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPEGLGTELLETLVKMAPTKEEEIKLKNYDGDLSKLGSAERFLKAVLDTPFAFKRVEAMLYRANFDAEVNYLRKSFQTMEAASEELRNSRLFLKLLEAVLRTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGAGAESANENVKMDSKFNEDEFKKQGLQVVAGLSRDLSNVKKAAGMDSDVLSSYLSKLETGLDKVRLVLQYEKPDMQGNFFNSTKLFLKYAEDEIVRSKADERKALFLVKEVTEYFHGNAAKEEAHPLRIFMIVRDFLNILDLVCKEVEKMHDRIVGGSGRSFRIAPNASLPVLNRYNSKQDRSSDEESSSP 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2570 873 MobiDBLite consensus disorder prediction 365 388 - -
Ssu2g2570 873 MobiDBLite consensus disorder prediction 45 69 - -
Ssu2g2570 873 MobiDBLite consensus disorder prediction 392 424 - -
Ssu2g2570 873 MobiDBLite consensus disorder prediction 350 364 - -
Ssu2g2570 873 SMART it6_source 427 837 IPR015425 -
Ssu2g2570 873 PANTHER FORMIN-RELATED 3 873 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Ssu2g2570 873 MobiDBLite consensus disorder prediction 192 219 - -
Ssu2g2570 873 SUPERFAMILY Formin homology 2 domain (FH2 domain) 373 833 - -
Ssu2g2570 873 PANTHER FORMIN-LIKE PROTEIN 3 873 - -
Ssu2g2570 873 MobiDBLite consensus disorder prediction 237 306 - -
Ssu2g2570 873 Gene3D Formin, FH2 domain 422 834 IPR042201 -
Ssu2g2570 873 MobiDBLite consensus disorder prediction 89 112 - -
Ssu2g2570 873 MobiDBLite consensus disorder prediction 144 432 - -
Ssu2g2570 873 MobiDBLite consensus disorder prediction 150 176 - -
Ssu2g2570 873 MobiDBLite consensus disorder prediction 42 112 - -
Ssu2g2570 873 Pfam Formin Homology 2 Domain 432 822 IPR015425 -
Ssu2g2570 873 ProSiteProfiles Formin homology-2 (FH2) domain profile. 427 848 IPR015425 -
Ssu2g2570 873 MobiDBLite consensus disorder prediction 319 349 - -
Ssu2g2570 873 MobiDBLite consensus disorder prediction 221 235 - -
Ssu2g2570 873 PRINTS Proline rich extensin signature 327 344 - -
Ssu2g2570 873 PRINTS Proline rich extensin signature 283 304 - -
Ssu2g2570 873 PRINTS Proline rich extensin signature 227 243 - -
Ssu2g2570 873 PRINTS Proline rich extensin signature 213 225 - -
Ssu2g2570 873 PRINTS Proline rich extensin signature 363 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2570 Ssu-Chr2 85007124 85012600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2570 410 863 FH2 protein (formin) Gene Family AT5G67470 72.271 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2570 - - gmx:100798670 1342.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2570 2 85007124 85012600 Ssu6g1790 6 30541802 30545925 PCT