Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2564 ATGAGTTGCAACGGGTGCCGGGTCCTTCGAAAGGGTTGCAGCGAGTCATGTATCCTGCGACCTTGTCTACAGTGGATCGACACGCCCGAAGCCCAAGGCCATGCCACTGTCTTCGTAGCCAAATTCTTCGGCCGTGCCGACCTCATGTCCTTCATTTCCAATGTCCCTGAACCGCAAAGGCCCGCTCTGTTTCAATCTCTGCTGTTCGAAGCGTGTGGACGAACGGTGAACCCCGTCAACGGTGCCGTGGGGCTTCTGTGGACCGGAAACTGGCACGTGTGCCAGGCAGCGGTTGAGACCGTGCTCCGTGGCGGCACCCTGAGGCCCATGCCGGAGCTTCTCGGCCTGGACGCTCCCACTCCCACCGGCGACGACGCCTCCGAAGGGGAAGTTACATGTACCGACCAGTGGAGGGTCCGAGATCCGAACCCGAATGTAAGGTTCGCGAGTTCGAGGTCCGATAAGGTCGCTTCCGGCGGTAAACACAAGCGATTTGAAGAGCTCGTCAAGCTCCAGACGACGACCGATCTCAATCTCCGCCTGACGCCGAGTTTCCTGCAGAACGTGTCGAGCTTCGGCTGCCGGCGGGAAATTCGCCGGCCGGGGTCGCCGTCGATGAACTCGGAGGAGTCCGTGACGACGACGGCGTGCTTGGAAAGTGGGATCGGAGATCACTACGCTCCCGACGGAGACCGGAAAGTGCTGAACCTTTTTATTTGA 720 0.6 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELLGLDAPTPTGDDASEGEVTCTDQWRVRDPNPNVRFASSRSDKVASGGKHKRFEELVKLQTTTDLNLRLTPSFLQNVSSFGCRREIRRPGSPSMNSEESVTTTACLESGIGDHYAPDGDRKVLNLFI 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2564 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 239 - -
Ssu2g2564 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 239 - -
Ssu2g2564 239 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Ssu2g2564 239 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2564 Ssu-Chr2 84832039 84832838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2564 1 238 AS2 family AT3G49940 55.859 1.56e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu2g2564 LOB 6.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2564 - - gmx:100802764 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2564 2 84832039 84832838 Ssu7g0511 7 9438902 9440291 PCT
Ssu6g1795 6 30763597 30764390 Ssu2g2564 2 84832039 84832838 PCT